View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_499 (Length: 235)
Name: NF10954A_low_499
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_499 |
 | |
|
| [»] scaffold0284 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0216 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0284 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 2254 - 2445
Alignment:
| Q |
17 |
catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2254 |
catcacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta |
2353 |
T |
|
| Q |
117 |
acatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctc |
208 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2354 |
acatttacttttgcatccagggacagatctagacattggatacatgtgaggctaaaatagtccatcaatctattaaaattttaaattgtctc |
2445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6553219 - 6553013
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact |
103 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6553219 |
caatgagttggatcatcacattatgttaaggttaatcatacaattgacagcacaccatcatccaaaatcttagtctattaggtatatcgatcatctcact |
6553120 |
T |
|
| Q |
104 |
tatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553119 |
tatatgtttcttaacatttacttttgcatctagggacagatctagacattggatacatgtgaggctaaaatagtccatcaatgtattaaaattttaaatt |
6553020 |
T |
|
| Q |
204 |
gtctctg |
210 |
Q |
| |
|
||||||| |
|
|
| T |
6553019 |
gtctctg |
6553013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6552819 - 6552613
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact |
103 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6552819 |
caatgagttggatcatcacattatgttaaggttaatcatacaattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact |
6552720 |
T |
|
| Q |
104 |
tatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaatt |
203 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6552719 |
tatacgttttttaacatttacttttgcatccagggacagatctagacattggatacatgtgaggctaaaatagtccatcaatgtattaaagatttaaatt |
6552620 |
T |
|
| Q |
204 |
gtctctg |
210 |
Q |
| |
|
||||||| |
|
|
| T |
6552619 |
gtctctg |
6552613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 313003 - 312787
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact |
103 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
313003 |
caatgagttggatcatcacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact |
312904 |
T |
|
| Q |
104 |
tatatgtttcttaacatttacttttgcatccacggacagatcga----------gacattggatacatgtcaggctaaaatagtccatcaatgtattaaa |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
312903 |
tatatgtttcttaacatttacttttgcatccacagacagatcgagacagatcgagacattggatacatgtgaggctaaaatagtccatcaatgtattaaa |
312804 |
T |
|
| Q |
194 |
attttaaattgtctctg |
210 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
312803 |
attttaaattgtctctg |
312787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 6561075 - 6561023
Alignment:
| Q |
83 |
aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca |
135 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
6561075 |
aggtatattggtcatctcacttatatgttgtttaacatctacttttgtatcca |
6561023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 35323 - 35117
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact |
103 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35323 |
caatgagttggatcatcactttatgttaaggttaatcatacaattgacagcacaacatcatccaaaatcttagtgtattaggtatatcgatcatctaact |
35224 |
T |
|
| Q |
104 |
tatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35223 |
tatatgtttcttaacatttacttttgcatccagggacaaatctagacattggatacatgtgaggctaaaatagtccatcaatgtattaaaattttaaatt |
35124 |
T |
|
| Q |
204 |
gtctctg |
210 |
Q |
| |
|
||||||| |
|
|
| T |
35123 |
gtctctg |
35117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 41528434 - 41528620
Alignment:
| Q |
24 |
ttatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacattta |
123 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41528434 |
ttatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacattta |
41528533 |
T |
|
| Q |
124 |
cttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41528534 |
cttttgcatccagggacatatctagacattggatacatgtgaggctaaaatagtacatcaatgtattaaaattttaaattgtctctg |
41528620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 36754454 - 36754647
Alignment:
| Q |
17 |
catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36754454 |
catcacattatgttaaggttaatcatactattgacagcagatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta |
36754553 |
T |
|
| Q |
117 |
acatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36754554 |
acatttacttttgcatccagggatagatctagacattggatacatgtgaggctaagatagtccatcaatgtattaaaattttaaattgtctctg |
36754647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 43216917 - 43216975
Alignment:
| Q |
54 |
cacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt |
112 |
Q |
| |
|
|||||||||| | ||||||||| | |||| |||||| ||||||||||||||||||||| |
|
|
| T |
43216917 |
cacatcatcacccaaaatcttaaagcattatgtatattgatcatctcacttatatgttt |
43216975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 45919624 - 45919830
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact |
103 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45919624 |
caatgagttggatcatcacattatgttaaggttaatcatacaattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact |
45919723 |
T |
|
| Q |
104 |
tatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaatt |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45919724 |
tatatatttcttaacatttacttttgcatccagggacggatctagacattggatacatgtgagactaaaatagtccaccaatgtattaaaattttaaatt |
45919823 |
T |
|
| Q |
204 |
gtctctg |
210 |
Q |
| |
|
||||||| |
|
|
| T |
45919824 |
gtctctg |
45919830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 49880463 - 49880255
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcg--atcatctca |
101 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49880463 |
caatgagttggatcatcacattatgttaaggttaatcatacaattgacaacacatcatcaatcaaaatcttagtgtattaggtatatctttatcatctca |
49880364 |
T |
|
| Q |
102 |
cttatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| || ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
49880363 |
cttatatgtttcttaacatttacttttgcatccagggacggatctagacattggatacatgcgagactaaaatagtccaccaatgtatttaaattttaaa |
49880264 |
T |
|
| Q |
202 |
ttgtctctg |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
49880263 |
ttgtctctg |
49880255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 40872562 - 40872618
Alignment:
| Q |
147 |
agacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaatt |
203 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
40872562 |
agacatttgatatatgtgaggctaaaatagtcccttaatgtatcaaaattttaaatt |
40872618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 9890556 - 9890597
Alignment:
| Q |
166 |
ggctaaaatagtccatcaatgtattaaaattttaaattgtct |
207 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
9890556 |
ggctaaaatggtctttcaatgtattaaaattttaaattgtct |
9890597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 16853737 - 16853665
Alignment:
| Q |
54 |
cacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttactt |
126 |
Q |
| |
|
|||||||||| | |||| |||| | |||| |||||| ||||||||||||||||||||| | || |||||||| |
|
|
| T |
16853737 |
cacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaagatttactt |
16853665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 31088746 - 31088829
Alignment:
| Q |
54 |
cacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact--tatatgtttcttaacatttacttttgcatcca |
135 |
Q |
| |
|
|||| ||||||| ||||| ||| | ||||||||||| |||||||||||| ||||||||||| |||| |||| ||||||||| |
|
|
| T |
31088746 |
cacaccatcatccaaaatattaaggcattaggtatattgatcatctcacttatatatgtttctcaacacctactcttgcatcca |
31088829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 31967255 - 31967448
Alignment:
| Q |
17 |
catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31967255 |
catcacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta |
31967354 |
T |
|
| Q |
117 |
acatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| |||||||||||| ||| |||| ||||| ||||||||| |
|
|
| T |
31967355 |
acatttacttttgcatccagggacaaatctagacattggatacatgtgaggctaaagtagtccatcaatttataaaaaatttaagttgtctctg |
31967448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 23077824 - 23077889
Alignment:
| Q |
142 |
gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtct |
207 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||| | ||||||||| |||||||||| |||||| |
|
|
| T |
23077824 |
gatctagacatcggatacatgtggggctaaaatagttcctcaatgtatcaaaattttaagttgtct |
23077889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 36727631 - 36727670
Alignment:
| Q |
94 |
tcatctcacttatatgtttcttaacatttacttttgcatc |
133 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
36727631 |
tcatctcacatatatgtttcttaacatctacttttgcatc |
36727670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 9470617 - 9470689
Alignment:
| Q |
137 |
ggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctct |
209 |
Q |
| |
|
|||| |||| ||||||| ||||||||| || |||||||||| | ||| ||| ||||||||||||||||||| |
|
|
| T |
9470617 |
ggacggatctagacatttgatacatgtggggttaaaatagtcactaaatatatcaaaattttaaattgtctct |
9470689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 36720169 - 36720129
Alignment:
| Q |
80 |
attaggtatatcgatcatctcacttatatgtttcttaacat |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
36720169 |
attaggtatatggatcatctcacttatatgttgctcaacat |
36720129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 41746338 - 41746406
Alignment:
| Q |
142 |
gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
|||| ||||||| |||| |||| ||||||||||| || | ||| ||| |||||||||||||||||||| |
|
|
| T |
41746338 |
gatctagacatttgatatatgtggggctaaaatagacccttaatatatcaaaattttaaattgtctctg |
41746406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 9023635 - 9023444
Alignment:
| Q |
19 |
tcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaac |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9023635 |
tcacattatgttaaggttaatcatacaattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttgtatgtttcttaac |
9023536 |
T |
|
| Q |
119 |
atttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9023535 |
atttacttttgcatccagggacaaatatagacattggatacatgtgaggctaagatagtctatcaatgtattaaaattttaaattgtctctg |
9023444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 19858 - 20064
Alignment:
| Q |
5 |
caatgagatgga-catcacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcact |
103 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19858 |
caatgagttggatcatcacattatgttatggttaataatacaattggcagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact |
19957 |
T |
|
| Q |
104 |
tatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19958 |
tatatgtttcttaacatttacttttgcattcagggacaaatctagacattggatacatgtgaggttaagatagtccatcaatgtattaaaattttaaatt |
20057 |
T |
|
| Q |
204 |
gtctctg |
210 |
Q |
| |
|
||||||| |
|
|
| T |
20058 |
gtctctg |
20064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 50240138 - 50239968
Alignment:
| Q |
20 |
cacattatgttaaggttaatcgtacaattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttc---tta |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50240138 |
cacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctaatta |
50240039 |
T |
|
| Q |
117 |
acatttacttttgcatccacggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgt |
187 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
50240038 |
acatttacttttgcatcgagggacagatctagacattggctacatgtgaggctaaaatagtccatcaatgt |
50239968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 7672614 - 7672541
Alignment:
| Q |
137 |
ggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
|||| |||| ||| ||| ||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7672614 |
ggacggatctagatatttgatacatgtatggttaaaatagttcatcaatgtattaaaattttaaattgtctctg |
7672541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 43838725 - 43838648
Alignment:
| Q |
142 |
gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgttactacac |
219 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||| | ||||||||| ||||||||| |||||||||| | |||||| |
|
|
| T |
43838725 |
gatcgaaacatttgatacatgtggggctaaaatagttcctcaatgtatcaaaattttacattgtctctgattctacac |
43838648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 14249223 - 14249290
Alignment:
| Q |
45 |
aattgatagcacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt |
112 |
Q |
| |
|
|||||||| |||||||||| | |||| |||| |||||| |||||| | ||||||||||||||||||| |
|
|
| T |
14249223 |
aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt |
14249290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 30006165 - 30006206
Alignment:
| Q |
169 |
taaaatagtccatcaatgtattaaaattttaaattgtctctg |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
30006165 |
taaaatagtcccacaatgtattaaaattttaaattatctctg |
30006206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 6525116 - 6525049
Alignment:
| Q |
140 |
cagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtct |
207 |
Q |
| |
|
|||||| ||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6525116 |
cagatctagacatttgatacatgtgggactaaaatagtccatcaatgtatcaaaattttaaattgtct |
6525049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 29157 - 29209
Alignment:
| Q |
83 |
aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
29157 |
aggtatattgatcatctcacttatatgttgtttaacatctacttttgcatcca |
29209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 32829 - 32751
Alignment:
| Q |
54 |
cacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc |
133 |
Q |
| |
|
|||||||||||| ||||| ||| | || ||||||||| ||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
32829 |
cacatcatcatc-aaaattttaacgcatcaggtatatcagtcatctcacttatatgtttcttaacatatgctcttgcatc |
32751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 11703 - 11645
Alignment:
| Q |
54 |
cacatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt |
112 |
Q |
| |
|
|||||||||| | |||| |||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
11703 |
cacatcatcacccaaaaccttaaagtattatgtatattgatcatctcacttatatgttt |
11645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 2929532 - 2929478
Alignment:
| Q |
79 |
tattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc |
133 |
Q |
| |
|
|||||||||| | | ||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
2929532 |
tattaggtatcttggtcatctcacatatatgtttcttaacatctacttttacatc |
2929478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 17102 - 17166
Alignment:
| Q |
142 |
gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtct |
207 |
Q |
| |
|
|||| ||||||| ||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
17102 |
gatctagacatttgatacatgtggggc-aaaatagtctttcaatgtatcaaaattttaaattgtct |
17166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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