View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_503 (Length: 235)

Name: NF10954A_low_503
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_503
NF10954A_low_503
[»] chr4 (10 HSPs)
chr4 (37-235)||(8654786-8654984)
chr4 (37-235)||(47541154-47541352)
chr4 (44-235)||(3129702-3129890)
chr4 (51-235)||(7662966-7663150)
chr4 (42-235)||(2631627-2631820)
chr4 (88-235)||(23873240-23873387)
chr4 (88-235)||(55298849-55298996)
chr4 (42-235)||(20675251-20675444)
chr4 (42-235)||(8486699-8486892)
chr4 (170-235)||(49926112-49926177)
[»] scaffold0029 (1 HSPs)
scaffold0029 (37-235)||(134567-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (37-235)||(312394-312592)
scaffold0002 (37-235)||(327848-328046)
[»] chr5 (5 HSPs)
chr5 (14-235)||(10486610-10486831)
chr5 (42-235)||(34481176-34481369)
chr5 (121-235)||(587745-587859)
chr5 (180-221)||(23923092-23923133)
chr5 (190-227)||(27795720-27795757)
[»] chr3 (12 HSPs)
chr3 (37-235)||(49731645-49731843)
chr3 (37-235)||(30167057-30167255)
chr3 (42-235)||(2813218-2813411)
chr3 (42-235)||(29309637-29309830)
chr3 (42-235)||(6176196-6176389)
chr3 (114-235)||(9379326-9379447)
chr3 (163-235)||(23602002-23602074)
chr3 (171-235)||(25872955-25873019)
chr3 (163-220)||(8943596-8943653)
chr3 (190-229)||(48569905-48569944)
chr3 (192-230)||(46248738-46248776)
chr3 (177-229)||(18368808-18368860)
[»] chr1 (7 HSPs)
chr1 (37-235)||(21528390-21528592)
chr1 (42-235)||(36306013-36306206)
chr1 (42-235)||(37530795-37530988)
chr1 (88-235)||(32353061-32353208)
chr1 (42-235)||(48073149-48073342)
chr1 (154-235)||(48265548-48265629)
chr1 (163-235)||(30970447-30970519)
[»] chr7 (8 HSPs)
chr7 (37-235)||(15653418-15653616)
chr7 (37-189)||(46623968-46624120)
chr7 (42-235)||(13440282-13440475)
chr7 (42-223)||(12378446-12378627)
chr7 (163-235)||(45943080-45943152)
chr7 (106-229)||(43105546-43105669)
chr7 (192-230)||(27723973-27724011)
chr7 (164-229)||(41339760-41339825)
[»] chr8 (6 HSPs)
chr8 (42-235)||(7452581-7452774)
chr8 (42-232)||(16420728-16420918)
chr8 (164-229)||(12134563-12134628)
chr8 (186-235)||(19384572-19384621)
chr8 (181-227)||(13879344-13879390)
chr8 (179-227)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (37-235)||(45421748-45421947)
chr2 (37-235)||(13550353-13550551)
chr2 (42-234)||(26894330-26894522)
chr2 (42-234)||(26899769-26899961)
chr2 (88-235)||(43627728-43627875)
chr2 (139-235)||(31085452-31085548)
chr2 (139-235)||(33548101-33548197)
chr2 (37-157)||(13550884-13551004)
chr2 (180-229)||(36804147-36804196)
chr2 (180-235)||(22052856-22052911)
chr2 (191-229)||(36804362-36804400)
chr2 (181-227)||(40176905-40176951)
[»] scaffold0418 (1 HSPs)
scaffold0418 (51-235)||(7904-8088)
[»] chr6 (8 HSPs)
chr6 (88-235)||(25318083-25318230)
chr6 (88-235)||(26205577-26205724)
chr6 (42-235)||(23347185-23347378)
chr6 (88-235)||(15674054-15674205)
chr6 (183-227)||(33630334-33630378)
chr6 (164-227)||(4474935-4474998)
chr6 (205-235)||(1683269-1683299)
chr6 (163-229)||(5041753-5041819)
[»] scaffold0131 (1 HSPs)
scaffold0131 (37-112)||(4262-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (164-229)||(15490-15555)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 8654786 - 8654984
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654786 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 8654885  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8654886 tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 47541352 - 47541154
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||| ||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  47541352 ggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttc 47541253  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| |||| |||||||  |||||||||||||||||||||||||||||||    
T  47541252 tgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 3129702 - 3129890
Alignment:
Q  44 taggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat 143  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  3129702 taggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttctctattgat 3129801  T
Q  144 tcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||||   || |||  |||||||||||||||| | ||||||| ||||||||||    |||||||||||||||||||||||||||||||    
T  3129802 tcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgtagggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  51 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 150  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  151 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

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Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 2631820 - 2631627
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  2631820 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 2631721  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2631720 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 187  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  188 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 187  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  188 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 20675444 - 20675251
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||||||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||    
T  20675444 gataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttg 20675345  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| | |  ||||||||| |||||||||||||    
T  20675344 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||| | |||||| |   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  170 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 134567 - 134765
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134567 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 134666  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  134667 tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 312394 - 312592
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312394 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 312493  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  312494 tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 327848 - 328046
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327848 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 327947  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  327948 tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 10486610 - 10486831
Alignment:
Q  14 agatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagttt 113  Q
    ||||||||||||||||       ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||     
T  10486610 agatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttc 10486709  T
Q  114 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 213  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10486710 atgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcgg 10486809  T
Q  214 agtgtagggctttacttcttga 235  Q
    ||||||||||||||||||||||    
T  10486810 agtgtagggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 34481369 - 34481176
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||||||||||| |||||| || ||||  | ||| || || |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||    
T  34481369 gataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttgctctctgttg 34481270  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  34481269 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
Q  121 tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 220  Q
    ||||| ||||||| |||||   ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  221 ggctttacttcttga 235  Q
    |||||||||||||||    
T  587759 ggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  180 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 221  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  190 tgtgggaggaggacttgttagcggagtgtagggcttta 227  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 49731645 - 49731843
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||    
T  49731645 ggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctc 49731744  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||| |||||||| |||| ||| ||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||    
T  49731745 tgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 30167057 - 30167255
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||| | |||| ||||||||||||||| ||    
T  30167057 ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtggcagacttgttctc 30167156  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  ||||||||||||||||| |||||||||||||    
T  30167157 tgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggactttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 2813218 - 2813411
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  2813218 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 2813317  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2813318 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 29309830 - 29309637
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |    
T  29309830 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcg 29309731  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||| |||||||||||    
T  29309730 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 6176196 - 6176389
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||| ||||||||||| |||||| || || |||||| | |||||||    
T  6176196 gataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttg 6176295  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  6176296 attcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  114 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 213  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  214 agtgtagggctttacttcttga 235  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  163 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  171 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  163 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 220  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  190 tgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  192 tgggaggaggacttgttagcggagtgtagggctttactt 230  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  177 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 21528592 - 21528390
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||    
T  21528592 ggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctc 21528493  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggag----tgtagggctttacttct 232  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||| |||  ||||||||||||| ||||||||| |     ||||||||||||||||    
T  21528492 tgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttct 21528393  T
Q  233 tga 235  Q
    |||    
T  21528392 tga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 36306206 - 36306013
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||| ||||||||| | |||| ||||||||||||||| |||||||    
T  36306206 gataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcagacttgttctctgttg 36306107  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||| |||||||  |||||| ||||||||||||||||||||||||    
T  36306106 atttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggctttacttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 37530988 - 37530795
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||||||||||| |||||| || ||||  |  || || || |||||||||||||||||||||||  ||||| ||||||||||||| | |||||||    
T  37530988 gataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttg 37530889  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  37530888 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 187  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  188 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    || |||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 48073149 - 48073342
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  48073149 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 48073248  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  48073249 attcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  154 ggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  163 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 15653418 - 15653616
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||| ||    
T  15653418 ggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctatggcagacttgttctc 15653517  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||| |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  15653518 tgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagggctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 46624120 - 46623968
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||| ||||||||| | |||||||||||||||||||| ||    
T  46624120 ggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtggcagacttgttctc 46624021  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggc 189  Q
    |||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624020 tgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 13440475 - 13440282
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  13440475 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 13440376  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   ||||||||||||||||||| || |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  13440375 attcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 12378446 - 12378627
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| |||||||||||||| |  |||  || | || ||| |||||||||||||  ||||||||| | |||||||||||| | ||||| | ||||     
T  12378446 gataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgtta 12378545  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 223  Q
    | ||| ||| |||||| | ||||| |||| |||| || |||||||||| ||||||||||||  |||||||||||||||||||    
T  12378546 agtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  163 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  106 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 205  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  206 gttagcggagtgtagggctttact 229  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  192 tgggaggaggacttgttagcggagtgtagggctttactt 230  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  164 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 7452774 - 7452581
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  7452774 gataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagacttgttctctgttg 7452675  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||||||||||  || |||| ||||||||||||||||||||||||    
T  7452674 atttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgtagggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 16420728 - 16420918
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  16420728 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 16420827  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 232  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420828 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  164 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  186 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  181 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 227  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  179 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 227  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 45421947 - 45421748
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||| | |||| ||||||||||||||| ||    
T  45421947 ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtggcagacttgttctc 45421848  T
Q  137 tgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || ||||||||||||  |||||||||||||||||||||| ||||||||    
T  45421847 tgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtagggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 13550551 - 13550353
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  ||||| |||||| | ||    
T  13550551 ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc 13550452  T
Q  137 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||| ||||||||| |||||||    
T  13550451 tgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattcttga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 26894330 - 26894522
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26894330 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26894429  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 234  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894430 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 26899769 - 26899961
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26899769 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26899868  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 234  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899869 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 187  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  |||||| |   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  188 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  139 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||| ||||||||||| | | |||||||||||||| | |||||||| | ||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  139 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 13551004 - 13550884
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 136  Q
    |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  ||||| |||||| | ||    
T  13551004 ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc 13550905  T
Q  137 tgttgattcggagcagtgggg 157  Q
    |||||||||||||||||||||    
T  13550904 tgttgattcggagcagtgggg 13550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  180 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  180 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  191 gtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  181 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 227  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  51 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 150  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  151 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 187  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  188 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 187  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  188 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 23347185 - 23347378
Alignment:
Q  42 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 141  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  23347185 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttg 23347284  T
Q  142 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23347285 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  88 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt 183  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  ||||||    |   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  184 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 235  Q
    |||||| |||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  183 ttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 227  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  164 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 227  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  205 tgttagcggagtgtagggctttacttcttga 235  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  163 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

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Target: scaffold0131 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 4262 - 4337
Alignment:
Q  37 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  4262 ggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt 4337  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  164 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 229  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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