View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_504 (Length: 235)
Name: NF10954A_low_504
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_504 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 1240021 - 1239798
Alignment:
| Q |
11 |
tcagcttcaaatattaagatttgaaggtgttcataagctttttgaagggtgtggttctgaagcaggagttatatttaaggaacatgtgaggattagaaga |
110 |
Q |
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| T |
1240021 |
tcagctccaaatattaagatttgaaggtgttcacaaactttttgaagggtgtggttcagaagcgggtgttatatttaaagaacatgtgagaattagaaga |
1239922 |
T |
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| Q |
111 |
caattatggattataagtcataggtatagattctttattatttgttgtgtggttacaatgagtgttagtcaattgggttctctattgctagttttggctt |
210 |
Q |
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| T |
1239921 |
caattatggattataagtcataggtatagattctttataatttgttgtgtggttacaatgagtgttagtcaattgggttctctattgctagttttggctt |
1239822 |
T |
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| Q |
211 |
ctaagtcagagaaaacattcttca |
234 |
Q |
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| T |
1239821 |
ctaagtcagagaaaacattcttca |
1239798 |
T |
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