View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_505 (Length: 235)
Name: NF10954A_low_505
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_505 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 22449281 - 22449056
Alignment:
| Q |
6 |
ggatacaaaatattgataaatgtaaaggatctctaatacaaatggagtgtactaggatttccttcgggtagctgtcctgccattatgatctatctgtaac |
105 |
Q |
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| T |
22449281 |
ggatacaaaatattgataaatgttgaggatctctaataccaatggagtgtactagcatttccttcgggtagctgtcctgccattatgatctatctgtaac |
22449182 |
T |
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| Q |
106 |
ttataggtgtgcggatattactctccatgtaatataaagtatgcgcaagtatacacaagagaaaacttacataaaataccatagatgtagttctctctct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
22449181 |
ttataggtgtgcggatattactctccatgtaatataaagtatgcgcaagtatacacaagagaaaacttacataaaataccatagatgttgt----tctct |
22449086 |
T |
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| Q |
206 |
actcataagtatgacatgcagacatgaaat |
235 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22449085 |
actcataagtatgacatgcagacatgaaat |
22449056 |
T |
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