View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_509 (Length: 234)
Name: NF10954A_low_509
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_509 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 78550 - 78750
Alignment:
| Q |
15 |
acatcagagaggagaaccgaaattacaattaccatcgtcgaactcaagaacatgaagtaaaagaagcgttaaaa-agatgagtaaaggtagggattaata |
113 |
Q |
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| T |
78550 |
acattagagaggagaaccgaaattacaattactatcgtcaaactcaagaacatgaagtaaaagaagcgttaaaaaagatgagtaaaggtaaggattaata |
78649 |
T |
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| Q |
114 |
gtagtatggtagtggattgtgatctttcctgcggtatttgactatttactttttatgataaccacttttctacttgatgaattgcatttcctatttatat |
213 |
Q |
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| T |
78650 |
gtagtatggtagtggattgtgatctttcctgcggtatttgactatttactttttatgataaccacttttctacttgatgaattgcatttcctatttatat |
78749 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
78750 |
a |
78750 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 17223130 - 17223071
Alignment:
| Q |
32 |
cgaaattacaattaccatcgtcgaactcaagaacatgaagtaaaagaagcgttaaaaaga |
91 |
Q |
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| T |
17223130 |
cgaaattacaattactatcgtcgaattcaagaacaagaggtaaaagaaacattaaaaaga |
17223071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 56224550 - 56224590
Alignment:
| Q |
58 |
tcaagaacatgaagtaaaagaagcgttaaaaagatgagtaa |
98 |
Q |
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| T |
56224550 |
tcaagaacatgaggtaaaagaagcgttgaaaggatgagtaa |
56224590 |
T |
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