View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_51 (Length: 416)
Name: NF10954A_low_51
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 191 - 410
Target Start/End: Original strand, 27915071 - 27915288
Alignment:
| Q |
191 |
tagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattttc |
290 |
Q |
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| T |
27915071 |
tagtaacatatattttataattcaataaaacggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattattttc |
27915170 |
T |
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| Q |
291 |
cttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaaccagttaccgacatatactagtactcag |
390 |
Q |
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| T |
27915171 |
cttctggttgccattttcctcgatcttacaatattgtgggaacactgacaaagtgcaccatgaaccac--aaccatttaccgacatatgttagtactcag |
27915268 |
T |
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| Q |
391 |
atttttcttaataattttag |
410 |
Q |
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|||||||||||||||||||| |
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| T |
27915269 |
atttttcttaataattttag |
27915288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 27914646 - 27914817
Alignment:
| Q |
5 |
ccaacaatatacctggatcgtgcgaagaatctagtatatatatctgcaagtggccaatcaagtactctttcatgcaagtatccatgaccaatgtattaat |
104 |
Q |
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| T |
27914646 |
ccaacaatatagctggatcgtgcgaagaatctagtatatatatctgcaagtagccaatcacgtactctttcttgcaagtttccatgaccaatgtattaat |
27914745 |
T |
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| Q |
105 |
tatttaagtacgtaatacgtatgttcttgtcctccgacccctactcaataaacagacaatgaaagtgtgttt |
176 |
Q |
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| T |
27914746 |
tatttaagtacgtaatacgtatgttcttgtcctcagacccctactctctaaacagacaataaaagtgtgttt |
27914817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 189 - 365
Target Start/End: Original strand, 27909681 - 27909857
Alignment:
| Q |
189 |
actagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattt |
288 |
Q |
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| T |
27909681 |
actagtaacatatattttataattcaataaaatggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattatat |
27909780 |
T |
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| Q |
289 |
tccttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaacca |
365 |
Q |
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| T |
27909781 |
cccttctgattgccattttccttgatcttacaatatcgtgggaacacagacaaagtgcatcatgaaccacaaaacca |
27909857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 27907919 - 27907964
Alignment:
| Q |
9 |
caatatacctggatcgtgcgaagaatctagtatatatatctgcaag |
54 |
Q |
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| T |
27907919 |
caatatagctgaatcgtgcgaaggatctagtatgtatatctgcaag |
27907964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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