View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_511 (Length: 234)
Name: NF10954A_low_511
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_511 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24639829 - 24639595
Alignment:
| Q |
1 |
atgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgtcatcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24639829 |
atgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgacatcagt |
24639730 |
T |
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| Q |
101 |
ttaaacttcatcaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaatacca-atgacttactgtgaaga |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |
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| T |
24639729 |
ttaaacttcattaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaataacatatgacttactgtaaaga |
24639630 |
T |
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| Q |
200 |
taaatgagtaagaatcctctgtctgaaattattgt |
234 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
24639629 |
taaatgagtaagaatcctctgtctgaaattcttgt |
24639595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 52490937 - 52491171
Alignment:
| Q |
1 |
atgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgtcatcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52490937 |
atgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgacatcagt |
52491036 |
T |
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| Q |
101 |
ttaaacttcatcaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaatacca-atgacttactgtgaaga |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |
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| T |
52491037 |
ttaaacttcattaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaataacatatgacttactgtaaaga |
52491136 |
T |
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| Q |
200 |
taaatgagtaagaatcctctgtctgaaattattgt |
234 |
Q |
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| T |
52491137 |
taaatgagtaagaatcctctgtctgaaattcttgt |
52491171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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