View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_516 (Length: 233)
Name: NF10954A_low_516
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_516 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 7001367 - 7001570
Alignment:
| Q |
20 |
agtatgcataataaatttttacatgaatttacccttagcaagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcacactttatgga |
119 |
Q |
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| T |
7001367 |
agtatgcgtaatcaatttttacatgaatttacccttagcaagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatgga |
7001466 |
T |
|
| Q |
120 |
actttaataagtttaatcttccatgaaattatgactccaaaacttgctcctccagcacctctaatatctcaaaacttgagtgggagggagtatacatatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
7001467 |
actttaataagtttaatcttccatgaaattatgactccaaaacttgctcctccagcacctctaatagctcaaaacttgagtgggagggagtatacatttt |
7001566 |
T |
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| Q |
220 |
cttc |
223 |
Q |
| |
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|||| |
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| T |
7001567 |
cttc |
7001570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 10792924 - 10792877
Alignment:
| Q |
155 |
tccaaaacttgctcctccagcacctctaatatctcaaaacttgagtgg |
202 |
Q |
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| T |
10792924 |
tccaaaacttgctcctccacctcctctaatagctcaaaacatgagtgg |
10792877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 38061749 - 38061876
Alignment:
| Q |
58 |
caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcacactttatggaactttaataagtttaatcttccatgaaattatgactcc |
157 |
Q |
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| T |
38061749 |
caagctttgttgcattttgatccaatgtttttggcacattgaacactgacacacttgatggaacttgaacaagtttaaccttccatgaaattatgactcc |
38061848 |
T |
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| Q |
158 |
aaaacttgctcctccagcacctctaata |
185 |
Q |
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| T |
38061849 |
aaaacttgctcctccacctcctctaata |
38061876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 38058704 - 38058569
Alignment:
| Q |
59 |
aagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcacactttatggaactttaataagtttaatcttccatgaaattatgactcca |
158 |
Q |
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||||||||||||||| || |||||||||||||| | ||| || ||||||||| || ||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38058704 |
aagctttgttgcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttccatgaaattatgactcca |
38058605 |
T |
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| Q |
159 |
aaacttgctcctccagcacctctaatatctcaaaac |
194 |
Q |
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| T |
38058604 |
aaacttgctcctccaccacctctaatagcccaaaac |
38058569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 38086543 - 38086416
Alignment:
| Q |
58 |
caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcacactttatggaactttaataagtttaatcttccatgaaattatgactcc |
157 |
Q |
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||||||||||||||||||| |||||||||||||| | | | |||||||||||| || ||||||||| || |||||||||||||||||||| |||||| || |
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| T |
38086543 |
caagctttgttgcattttgttccaatgtttttggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacacc |
38086444 |
T |
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| Q |
158 |
aaaacttgctcctccagcacctctaata |
185 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
38086443 |
aaaacttgctcctccaccacctctaata |
38086416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 38073033 - 38072897
Alignment:
| Q |
58 |
caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcacactttatggaactttaataagtttaatcttccatgaaattatgactcc |
157 |
Q |
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||||||||||||||||||| ||||||||| |||| | | | ||||| || ||| || ||||||||| || |||||||||||||||||||| |||||| || |
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| T |
38073033 |
caagctttgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatggaacttgaacaagtttaatcttccatgaaactatgacacc |
38072934 |
T |
|
| Q |
158 |
aaaacttgctcctccagcacctctaatatctcaaaac |
194 |
Q |
| |
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|||||||||||||||| ||||||||||| | |||||| |
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| T |
38072933 |
aaaacttgctcctccaccacctctaatagcccaaaac |
38072897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 38082118 - 38081991
Alignment:
| Q |
58 |
caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcacactttatggaactttaataagtttaatcttccatgaaattatgactcc |
157 |
Q |
| |
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||||||||||||||||||| ||||||| | |||| | | ||||| ||||| || |||||||| || |||||| ||||||||||||||||||||||| |
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| T |
38082118 |
caagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactcc |
38082019 |
T |
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| Q |
158 |
aaaacttgctcctccagcacctctaata |
185 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
38082018 |
aaaacttgctcctccaccacctctaata |
38081991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 34268711 - 34268758
Alignment:
| Q |
155 |
tccaaaacttgctcctccagcacctctaatatctcaaaacttgagtgg |
202 |
Q |
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||||||||||||||||||| | ||||||||| |||||||| ||||||| |
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| T |
34268711 |
tccaaaacttgctcctccacctcctctaatagctcaaaacatgagtgg |
34268758 |
T |
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