View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_517 (Length: 233)
Name: NF10954A_low_517
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_517 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 11629026 - 11628828
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaagttgtta |
121 |
Q |
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| T |
11629026 |
acgacttttccacatgctccaaagggtcattgcaacaagagcttgttgttgtgtggataacctgtcaattaaatcaaataacatagatgcaaagttgtta |
11628927 |
T |
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| Q |
122 |
gcattcaggagcagatcttggatgatgtgacggacaccaatcaactcccaacagctgatcgctttcgtacatacaaagaaaacatgcatctgtgtttct |
220 |
Q |
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| T |
11628926 |
gcattaaggagcagatcttggatgatgtgacggacaccaatcaactcccagcagctgatcgctttcgtacatacaaagaaaacatgcatctgtgtttct |
11628828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 9181285 - 9181483
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaagttgtta |
121 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9181285 |
acgacttttccacatgctccaaagggtcattgcaacaagagcttgttgttgtgtggataacctgtcaattaaatcaaataacatagatgcaaagttgtta |
9181384 |
T |
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| Q |
122 |
gcattcaggagcagatcttggatgatgtgacggacaccaatcaactcccaacagctgatcgctttcgtacatacaaagaaaacatgcatctgtgtttct |
220 |
Q |
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| T |
9181385 |
gcattaaggagcagatcttggatgatgtgacggacaccaatcaactcccagcagctgattgctttcgtacatacaaagaaaacatgtatctgagtttct |
9181483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 11626988 - 11626790
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaagttgtta |
121 |
Q |
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| T |
11626988 |
acgacttttccacatgctccaaagggtcattgcaacaagagcttgttgttgtgtggataacctgtcaattaaatcaaataacatagatgcaaagttgtta |
11626889 |
T |
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| Q |
122 |
gcattcaggagcagatcttggatgatgtgacggacaccaatcaactcccaacagctgatcgctttcgtacatacaaagaaaacatgcatctgtgtttct |
220 |
Q |
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| T |
11626888 |
gcattaaggagcagatcttggatgatgtgacggacaccaatcaactcccagcagctgattgctttcgtacatacaaagaaaacatgtatctgagtttct |
11626790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 34753244 - 34753286
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagct |
64 |
Q |
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| T |
34753244 |
acgacttttccacatgctccaaagggtcattgcaacaagagct |
34753286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 10159509 - 10159707
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaagttgtta |
121 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10159509 |
acgacttttccacatgctccaaagggtcattgcaacaagagcttgttgttgtgtggataacctgtcaattaaatcaaataacatagatgcaaagttgtta |
10159608 |
T |
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| Q |
122 |
gcattcaggagcagatcttggatgatgtgacggacaccaatcaactcccaacagctgatcgctttcgtacatacaaagaaaacatgcatctgtgtttct |
220 |
Q |
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| T |
10159609 |
gcattaaggagcagatcttggatgatgtgacggacaccaatcaactcccagcagctgattgctttcgtacatacaaagaaaacatgtatctgagtttct |
10159707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 39500651 - 39500453
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaagttgtta |
121 |
Q |
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| T |
39500651 |
acgacttttccacatgcaccaaagggtcattgcaacaagagcttgatgatgtgtggataacctgtcaattaaatcaaataacatagatgcaaagttgtta |
39500552 |
T |
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| Q |
122 |
gcattcaggagcagatcttggatgatgtgacggacaccaatcaactcccaacagctgatcgctttcgtacatacaaagaaaacatgcatctgtgtttct |
220 |
Q |
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| T |
39500551 |
gcattaaggagcagatcttggatgatgtgacggacaccaatcaactcccagcaactgatcgctttcgaacatacaaagaaaacatgcatctgtgtttct |
39500453 |
T |
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Target: scaffold0130 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 13792 - 13879
Alignment:
| Q |
27 |
ttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaa |
114 |
Q |
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| T |
13792 |
ttttccacatgctccaaagggtcattgcaacaagagcttgctgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaa |
13879 |
T |
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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 42328457 - 42328524
Alignment:
| Q |
22 |
acgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaa |
89 |
Q |
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| T |
42328457 |
acgacttttccacatgctccaaagggtcattgcaacaagagcttgttgtcgtgtggataacctgtcaa |
42328524 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 29844142 - 29843956
Alignment:
| Q |
17 |
acatcacgacttttccacatgatccaaagggtcattgcagcaagagcttgttgttgtgtggataacctgtcaaataaatcaaataacatagatgcaaagt |
116 |
Q |
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|||| ||||| |||||||| | |||||||||| ||| || || |||||| || |||| || ||||| |||| |||||||||||||||| ||||||||| |
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| T |
29844142 |
acattacgacctttccacaagctccaaagggtaattacaacatgagctttctgatgtggagacaacctctcaattaaatcaaataacataaatgcaaagt |
29844043 |
T |
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| Q |
117 |
tgttagcattcaggagcagatcttggatgatgtgacggacaccaatcaactcccaacagctgatcgctttcgtacatacaaagaaaa |
203 |
Q |
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| T |
29844042 |
tgttgaaattaaggagtaaatcttggatgatgtggtggacatcgataaactcctaacaactgatcgcttttagacaaacaaagaaaa |
29843956 |
T |
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