View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_518 (Length: 233)
Name: NF10954A_low_518
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_518 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 18148128 - 18147931
Alignment:
| Q |
25 |
ccaaacaatcaaaacactaaatcatacaccctcaactacttcaacaaacaaagtatggattacagcaccactcataatatacacgccggaattttcaacc |
124 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18148128 |
ccaaacaatcaaaacactaaaccatacaccctagactacttcaacaaacaaagtatggattacaacaccactcataatatacacgccgaaattttcaacc |
18148029 |
T |
|
| Q |
125 |
tactaagactccactgccacgacaacacttttattttatctaccagatcatccaccttcttcaccatattattaaaaatacagtcattcatattcttc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
18148028 |
tactaagactccactgccacgacaacacttttattttatctaccagatcatccaccttcttgaccatattattaaaaatacaatcattcattttcttc |
18147931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University