View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_52 (Length: 415)
Name: NF10954A_low_52
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_52 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 40821938 - 40821537
Alignment:
| Q |
10 |
aagaatattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctaggnnnnnnnnnnnnnnnn |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821938 |
aagaaaattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctagggaaaaaaaagaaaaga |
40821839 |
T |
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| Q |
110 |
nnnnntgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40821838 |
aaag-tgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgattttttag |
40821740 |
T |
|
| Q |
210 |
actcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc |
309 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821739 |
actcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc |
40821640 |
T |
|
| Q |
310 |
gttgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaagga |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40821639 |
gttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaagga |
40821540 |
T |
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| Q |
410 |
cac |
412 |
Q |
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| T |
40821539 |
cac |
40821537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 132 - 410
Target Start/End: Original strand, 20292021 - 20292289
Alignment:
| Q |
132 |
agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa |
228 |
Q |
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||||||||| |||||| ||| |||| ||||| |||| ||| |||| ||||| |||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
20292021 |
agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa |
20292116 |
T |
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| Q |
229 |
tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc |
328 |
Q |
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| T |
20292117 |
tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgg--gtttca------gttcaaatatgctctc |
20292207 |
T |
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| Q |
329 |
tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggac |
410 |
Q |
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| T |
20292208 |
tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggac |
20292289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 410
Target Start/End: Original strand, 20301393 - 20301491
Alignment:
| Q |
312 |
tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggac |
410 |
Q |
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||||||||| || ||| |||| |||||||| |||||| ||||||||||| |||||||| | ||| || ||||||||||||||||| ||| |||||| |
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| T |
20301393 |
tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggac |
20301491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 20064991 - 20064915
Alignment:
| Q |
334 |
tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggac |
410 |
Q |
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| T |
20064991 |
tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggac |
20064915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
244 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
319 |
Q |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
| Q |
310 |
gttgttcaaatatgctctctgttctgttcattttgttttgctattt |
355 |
Q |
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| T |
135603 |
gttgttcaaatgtgttctctgttttgttaattttgttttgctattt |
135558 |
T |
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