View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_528 (Length: 230)

Name: NF10954A_low_528
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_528
NF10954A_low_528
[»] chr1 (6 HSPs)
chr1 (1-208)||(36526186-36526393)
chr1 (1-175)||(37923557-37923731)
chr1 (24-205)||(37872076-37872260)
chr1 (49-165)||(35051609-35051725)
chr1 (28-146)||(8237318-8237434)
chr1 (51-87)||(19023346-19023382)
[»] chr5 (5 HSPs)
chr5 (13-208)||(23270042-23270237)
chr5 (55-208)||(4431011-4431164)
chr5 (22-135)||(14964961-14965074)
chr5 (1-208)||(26917359-26917566)
chr5 (1-53)||(4430765-4430817)
[»] chr8 (1 HSPs)
chr8 (1-199)||(29468266-29468464)
[»] chr7 (3 HSPs)
chr7 (49-166)||(5460931-5461048)
chr7 (32-127)||(28283936-28284031)
chr7 (41-203)||(29443757-29443918)
[»] chr2 (7 HSPs)
chr2 (26-193)||(9252436-9252603)
chr2 (24-130)||(37490893-37490999)
chr2 (24-165)||(19920791-19920932)
chr2 (1-90)||(13018965-13019054)
chr2 (49-203)||(8295127-8295281)
chr2 (49-87)||(13923026-13923064)
chr2 (51-164)||(36359621-36359734)
[»] chr4 (5 HSPs)
chr4 (25-166)||(43000413-43000554)
chr4 (72-163)||(43381919-43382010)
chr4 (55-94)||(29135150-29135189)
chr4 (33-93)||(35762788-35762849)
chr4 (53-165)||(39079649-39079761)
[»] scaffold0305 (1 HSPs)
scaffold0305 (24-152)||(18603-18731)
[»] chr3 (7 HSPs)
chr3 (49-134)||(9738634-9738720)
chr3 (57-193)||(46107349-46107485)
chr3 (50-105)||(21330778-21330833)
chr3 (48-92)||(43059104-43059148)
chr3 (50-133)||(35529008-35529090)
chr3 (49-91)||(47798396-47798438)
chr3 (47-136)||(46016235-46016324)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 36526393 - 36526186
Alignment:
Q  1 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526393 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccact 36526294  T
Q  101 tgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttg 200  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  36526293 tgttagctcgggcgtcattatcttatgctagttcccgagttcatgattatatgtcatcttgtattacaactaccattagaaatgaaatgagttaaatttg 36526194  T
Q  201 tttctgtc 208  Q
    ||||||||    
T  36526193 tttctgtc 36526186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 37923731 - 37923557
Alignment:
Q  1 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccact 100  Q
    ||||| ||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37923731 atgttcggcgcaattctgaatacttgcaaagtttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccact 37923632  T
Q  101 tgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactacta 175  Q
    |||||  ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  37923631 tgttagttagggcgtcattatcttatgctagttcccaagatcatgattatatgccatcttgtattaaaactacta 37923557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 37872076 - 37872260
Alignment:
Q  24 ttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatct 123  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||   || |   | ||||||    
T  37872076 ttgcaaagcttcacttctgaataatcaaaactttaagataagttttattaggagacaaacaaataatgtttcccacttattagtcagagttgcgttatct 37872175  T
Q  124 tatgctagttcccgagttc---atgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgtttct 205  Q
    |||| |||||||  |||||   ||||||||||||||||||||||||| ||   | |||  ||||||||||||| ||| |||||||    
T  37872176 tatggtagttccaaagttcatgatgattatatgccatcttgtattacgaccgttgttattaatgaaatgagttgagtatgtttct 37872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 35051725 - 35051609
Alignment:
Q  49 caaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgatt 148  Q
    ||||||||||||| |||||||||||| ||||||  ||||||| ||| ||| |||||| | | | ||||||||| ||||||||||||||   ||| ||||     
T  35051725 caaaactttaagaaaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacgtcattattttatgctagttcccacattcttgata 35051626  T
Q  149 atatgccatcttgtatt 165  Q
    |||| ||||||||||||    
T  35051625 atattccatcttgtatt 35051609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 8237318 - 8237434
Alignment:
Q  28 aaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatg 127  Q
    |||||||||||||  | | | ||||| ||||||||||||||||||||  ||||| |||||||| ||||| |||||||| ||||| || || |||||||||    
T  8237318 aaaacttcacttagaatttaccaaaattttaagataagtttcattag--gacaagcaaataatattgccgacttgttagctaggacgacaatatcttatg 8237415  T
Q  128 ctagttcccgagttcatga 146  Q
     | ||||||  ||||||||    
T  8237416 ttggttcccatgttcatga 8237434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 19023382 - 19023346
Alignment:
Q  51 aaactttaagataagtttcattaggagacaaacaaat 87  Q
    ||||||||||||||||||  |||||||||||||||||    
T  19023382 aaactttaagataagttttgttaggagacaaacaaat 19023346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 23270042 - 23270237
Alignment:
Q  13 attctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctaggg 112  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||    
T  23270042 attctgaacacttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattagaagacaagcaaataatgttgctcacttgttagctaggg 23270141  T
Q  113 cgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgtttctgtc 208  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||  | |||||||| |||| ||||||||||||    
T  23270142 agtcattatcttatgctagttcccaagttcatgattatatgccatcttgtattacaaatgctattaatagtgaaatgaattaactttgtttctgtc 23270237  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 4431011 - 4431164
Alignment:
Q  55 tttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgc 154  Q
    |||||||||||||| ||||||||| || ||||||||||| ||||||||||| ||||||||  |||||||||||||| ||| | | |||||| ||  ||||    
T  4431011 tttaagataagttttattaggagagaagcaaataatgtttcccacttgttagctagggcggaattatcttatgctaattctcaaattcatggttgcatgc 4431110  T
Q  155 catcttgtattacaactactattagaaatgaaatgagttaagtttgtttctgtc 208  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  4431111 catcttgtattacaattattattagaattgaaatgagttaagtttgtttctgtc 4431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 14964961 - 14965074
Alignment:
Q  22 acttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattat 121  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||  ||||||| ||||||    
T  14964961 acttgcaaaatttaatttatgaatcatcaaaactttaagataagtttcatcaagagacaatcaaataatgttgcccacttattagttagggcgccattat 14965060  T
Q  122 cttatgctagttcc 135  Q
    ||||| ||||||||    
T  14965061 cttatactagttcc 14965074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26917359 - 26917566
Alignment:
Q  1 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaa-ctttaagataagtttcattaggagacaaacaaataatgttgcccac 99  Q
    ||||||| ||| |||||  ||| ||||||| ||||||||| |||||  ||||| ||||||||||||||| |||||||||||| |||||| |||||||||     
T  26917359 atgtttgacgctattcttgatatttgcaaagcttcactta-gaatctacaaaaactttaagataagttttattaggagacaagcaaatagtgttgcccat 26917457  T
Q  100 ttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagttt 199  Q
     |  || | ||||||||||||||||||||| || |||  ||||||||| ||||||||||||| |||   |||  |||||  |||||||||||||||||||    
T  26917458 ctactagcaagggcgtcattatcttatgcttgtccccatgttcatgatcatatgccatcttgcattgagactgttattattaatgaaatgagttaagttt 26917557  T
Q  200 gtttctgtc 208  Q
    |||| ||||    
T  26917558 gtttttgtc 26917566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4430765 - 4430817
Alignment:
Q  1 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaa 53  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  4430765 atgtttggcgcgattatgaatacttgcaaaacttcacttgtgaatcatcaaaa 4430817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 29468464 - 29468266
Alignment:
Q  1 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccact 100  Q
    ||||| ||||| || || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||    
T  29468464 atgttcggcgcaatcctgaatatttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattatgagacaaacaaataatgttgcatact 29468365  T
Q  101 tgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagttt 199  Q
    ||||| |||||  |||||||| |||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||  ||||||||||||| |||||    
T  29468364 tgttagctaggatgtcattatgttatgctagttctcaagttcatgattacatgtcatcttgtattacaactactattattaatgaaatgagttgagttt 29468266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 5460931 - 5461048
Alignment:
Q  49 caaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgatt 148  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||| ||||  | |||||||||||||||||| | | | ||||||||     
T  5460931 caaaactttaagataagtttcattaggagacaagcaaatattgttgctgacttgttagctagaacatcattatcttatgctagtcctcaaattcatgatc 5461030  T
Q  149 atatgccatcttgtatta 166  Q
    ||||||||||||||||||    
T  5461031 atatgccatcttgtatta 5461048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 28283936 - 28284031
Alignment:
Q  32 cttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatg 127  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||   |||| ||||||||||||||    
T  28283936 cttcacttctgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgatgttcacttgttagtcagggtgtcattatcttatg 28284031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 29443757 - 29443918
Alignment:
Q  41 tgaatcatcaaaactttaagataagttt-cattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgag 139  Q
    |||||||||||||||||||||||||||| ||||   |||||| |||||||  |||  ||||||||| | ||||| | ||||||||||| | |||| |  |    
T  29443757 tgaatcatcaaaactttaagataagttttcattt--agacaagcaaataaatttgttcacttgttagcaagggcattattatcttatgtttgttctcatg 29443854  T
Q  140 ttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgttt 203  Q
    |||||||||||||| ||| ||||||||| | |||| |||  ||||||||||||| |||||||||    
T  29443855 ttcatgattatatgtcatattgtattacgattactgttattaatgaaatgagttgagtttgttt 29443918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 9252436 - 9252603
Alignment:
Q  26 gcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatctta 125  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||  |||||||| ||||||||| |||| |||||| |  || ||| |||||||||    
T  9252436 gcaaagcttcacttttgaatcatcaaaactttaacataagtttcattaaaagacaaacgaataatgttacccatttgttagcctggacgttattatctta 9252535  T
Q  126 tgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagtt 193  Q
    | ||||||| |  ||| ||||||||||| |||||| |||||| |||  | ||| | ||||||||||||    
T  9252536 tcctagttctcatgttaatgattatatgtcatcttatattacgactgttgttatatatgaaatgagtt 9252603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 37490893 - 37490999
Alignment:
Q  24 ttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatct 123  Q
    ||||||| |||||||  ||||||||||||||||| |||||||||||||||| ||||||  ||||||||||| |||||||||| ||||| |||||||||||    
T  37490893 ttgcaaagcttcactactgaatcatcaaaactttcagataagtttcattagaagacaagtaaataatgttgtccacttgttagctaggacgtcattatct 37490992  T
Q  124 tatgcta 130  Q
     ||||||    
T  37490993 catgcta 37490999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 19920791 - 19920932
Alignment:
Q  24 ttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatc 122  Q
    ||||||||| ||||||| ||||| |||||||||||||| || |||||||||||| |||| |||||| ||||  ||| |||||| | ||| ||||||||||    
T  19920791 ttgcaaaacatcactta-gaatctatcaaaactttaagctaggtttcattaggaaacaagcaaatagtgtttgccatttgttagcaaggacgtcattatc 19920889  T
Q  123 ttatgctagttcccgagttcatgattatatgccatcttgtatt 165  Q
    |||| | |||||||   ||||||||||||||||||||||||||    
T  19920890 ttataccagttcccacattcatgattatatgccatcttgtatt 19920932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 13019054 - 13018965
Alignment:
Q  1 atgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataat 90  Q
    ||||||||||| ||||| |||  ||  ||| |||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  13019054 atgtttggcgctattcttaatggttataaagcttcacatctgaatcatcaaaattttaagataagtttcattaggagacaatcaaataat 13018965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 8295127 - 8295281
Alignment:
Q  49 caaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgatt 148  Q
    |||||||||||||||||||| |||| |||||||| ||||| |||||| || ||| || | |    |||||||||||||| || |  |   ||||||||      
T  8295127 caaaactttaagataagttttattaagagacaaataaatagtgttgctcatttgctaacaaatttgtcattatcttatgttaatctctacgttcatgaac 8295226  T
Q  149 atatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgttt 203  Q
    |||| ||||||||||||   | | ||||||  |||||||||||||||||||||||    
T  8295227 atataccatcttgtattgagattgctattaataatgaaatgagttaagtttgttt 8295281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 13923026 - 13923064
Alignment:
Q  49 caaaactttaagataagtttcattaggagacaaacaaat 87  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  13923026 caaaactttaagataagtttcattaggaaacaagcaaat 13923064  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 36359621 - 36359734
Alignment:
Q  51 aaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattat 150  Q
    |||||||||||||||||| || ||  ||||| |||| ||||| ||  | |||||| | ||||| ||||| || |||||||| || | |  ||||||| ||    
T  36359621 aaactttaagataagttttatcagacgacaagcaaacaatgtggctaatttgttagcaagggcttcattgtcatatgctaggtctcaatgtcatgatcat 36359720  T
Q  151 atgccatcttgtat 164  Q
    ||||||||||||||    
T  36359721 atgccatcttgtat 36359734  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 43000554 - 43000413
Alignment:
Q  25 tgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatctt 124  Q
    |||||| |||||||||  ||  ||||||||||||| |||||||| |||||||||||| |||| ||| || | || |||||  ||| || |||||||||||    
T  43000554 tgcaaagcttcacttaaaaaaaatcaaaactttaatataagttttattaggagacaagcaaacaatattactcatttgtttgctaaggtgtcattatctt 43000455  T
Q  125 atgctagttcccgagttcatgattatatgccatcttgtatta 166  Q
    |||||| || || |||||||||||||||| ||||||| ||||    
T  43000454 atgctaatttccaagttcatgattatatgtcatcttgcatta 43000413  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 43381919 - 43382010
Alignment:
Q  72 taggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgta 163  Q
    ||||||||||||||||| |||||| || |||||| | ||| ||||||||||||||||||||| ||   |||||||| |||| | ||||||||    
T  43381919 taggagacaaacaaatagtgttgctcatttgttaacaaggacgtcattatcttatgctagtttccacattcatgatcatattctatcttgta 43382010  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 29135150 - 29135189
Alignment:
Q  55 tttaagataagtttcattaggagacaaacaaataatgttg 94  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  29135150 tttaagataagtttcgttaggagacaaataaataatgttg 29135189  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 35762788 - 35762849
Alignment:
Q  33 ttcacttatgaatcatcaaaactttaaga-taagtttcattaggagacaaacaaataatgtt 93  Q
    ||||||| ||||||||||||||||||| | ||| ||| |||| | |||||||||||||||||    
T  35762788 ttcacttgtgaatcatcaaaactttaatattaaattttattatgggacaaacaaataatgtt 35762849  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 39079649 - 39079761
Alignment:
Q  53 actttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatat 152  Q
    |||||||||||||||| ||||   || ||| ||||||||| |  || |||||| ||||   ||||||||||||||||||||  | | |||||||| ||||    
T  39079649 actttaagataagttttattacacgaaaaataaataatgtcgttcatttgttagctagaaagtcattatcttatgctagttttcaaattcatgatcatat 39079748  T
Q  153 gccatcttgtatt 165  Q
     | ||||||||||    
T  39079749 actatcttgtatt 39079761  T

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Target: scaffold0305 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 18731 - 18603
Alignment:
Q  24 ttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatct 123  Q
    ||||||| |||||||| ||||||||||||| || |||| ||||||||||| || | ||| ||||||| |||||||||||||| | | |  ||||||| ||    
T  18731 ttgcaaagcttcacttctgaatcatcaaaatttgaagacaagtttcattaagaaaaaaagaaataattttgcccacttgttagccaagttgtcattacct 18632  T
Q  124 tatgctagttcccgagttcatgattatat 152  Q
     ||||||| |||  |||||||||||||||    
T  18631 catgctagctccaaagttcatgattatat 18603  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 9738720 - 9738634
Alignment:
Q  49 caaaactttaagataagttt-cattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttc 134  Q
    |||||||||||||||  ||| ||||||| ||||| ||||||||||||| || |||||| |||| |||||||||||||||| ||||||    
T  9738720 caaaactttaagatattttttcattaggtgacaaccaaataatgttgctcatttgttagctagagcgtcattatcttatgttagttc 9738634  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 46107349 - 46107485
Alignment:
Q  57 taagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgcca 156  Q
    ||||||| ||||||||||| |||||  |||||||||||| || |||||| |||| |||||||||| ||||| |||||||  | ||||  || ||||||||    
T  46107349 taagatacgtttcattaggtgacaagtaaataatgttgctcatttgttagctagagcgtcattatattatgttagttcctaaattcacaatcatatgcca 46107448  T
Q  157 tcttgtattacaactactattagaaatgaaatgagtt 193  Q
     ||||||| || ||   |||||  |||||||||||||    
T  46107449 acttgtatcacgacagttattactaatgaaatgagtt 46107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 21330833 - 21330778
Alignment:
Q  50 aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgtta 105  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||| || ||||||    
T  21330833 aaaactttaagataagttttattcggagacaaataaataatgttgctcatttgtta 21330778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 43059104 - 43059148
Alignment:
Q  48 tcaaaactttaagataagtttcattaggagacaaacaaataatgt 92  Q
    |||||| |||||||||||||||||||  |||||||||||||||||    
T  43059104 tcaaaattttaagataagtttcattataagacaaacaaataatgt 43059148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 35529090 - 35529008
Alignment:
Q  50 aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagtt 133  Q
    |||| ||||| ||||||||||||| | ||||||||||| ||||||| || |||||| ||||   |||||||||||||| |||||    
T  35529090 aaaattttaaaataagtttcattaagcgacaaacaaatgatgttgctca-ttgttagctagaatgtcattatcttatgttagtt 35529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 47798438 - 47798396
Alignment:
Q  49 caaaactttaagataagtttcattaggagacaaacaaataatg 91  Q
    |||||||||||||||||||| |||| |||||||| ||||||||    
T  47798438 caaaactttaagataagttttattaagagacaaataaataatg 47798396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 46016324 - 46016235
Alignment:
Q  47 atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttccc 136  Q
    ||||||||| ||| |||||||||||| |  ||||| |||| |||||||| || ||||||  ||| || ||||||||||||| | ||||||    
T  46016324 atcaaaactataatataagtttcatttgaggacaatcaaacaatgttgctcatttgttagttagagcatcattatcttatgtttgttccc 46016235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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