View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_535 (Length: 230)
Name: NF10954A_low_535
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_535 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 1073756 - 1073573
Alignment:
| Q |
7 |
gcgcataccacaaacttacatgagggatggcttccatgtctagtgtccctacggttcccgcgcctcttctatggaggaaagatgttcctcttaaggtctt |
106 |
Q |
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| T |
1073756 |
gcgcatacaacacgcttacatgtgggacggttttcacgtctagtgtccctacggttcctgcacctcttctttggagaaaagatgttcctcataaagtctc |
1073657 |
T |
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| Q |
107 |
agcttttgcttagcgactcttccgtaatagattgcctacgaaggcgaatttattaagaagggggattattcagcatgattctca |
190 |
Q |
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| T |
1073656 |
ggtttttgcttggcgtctctttcgtaatagattgcctacgaaggtgaatttatttcgtaggggaattattcagcgtgatgctca |
1073573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 25090711 - 25090587
Alignment:
| Q |
66 |
gcgcctcttctatggaggaaagatgttcctcttaaggtcttagcttttgcttagcgactcttccgtaatagattgcctacgaaggcgaatttattaagaa |
165 |
Q |
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| T |
25090711 |
gcgccacttctttggaggaaagatgtccctttaaaagtctctatttttggttggcgcctttttcggaatagattgcctaagagagctaatttatttcgaa |
25090612 |
T |
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| Q |
166 |
gggggattattcagcatgattctca |
190 |
Q |
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| T |
25090611 |
gggggattattcagcatgatgctca |
25090587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 19925337 - 19925262
Alignment:
| Q |
150 |
gcgaatttattaagaagggggattattcagcatgattctcatatatatgtgtttaaccggttgtcggttgattgaatc |
227 |
Q |
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| T |
19925337 |
gcgaatttattacgaagggggattattcagcatgattctcat--atatgtgtttaaccggttgtaggttgattgaatc |
19925262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 16785668 - 16785748
Alignment:
| Q |
110 |
ttttgcttagcgactcttccgtaatagattgcctacgaaggcgaatttattaagaagggggattattcagcatgattctca |
190 |
Q |
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| T |
16785668 |
ttttgcttggcgtcttttccgtggtagattgcctatgaaggcgaatttattcagaaggggaattgttcatcatgatgctca |
16785748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 16238943 - 16239049
Alignment:
| Q |
78 |
tggaggaaagatgttcctcttaaggtcttagcttttgcttagcgactcttccgtaatagattgcctacgaaggcgaatttattaagaagggggattattc |
177 |
Q |
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| T |
16238943 |
tggaggaaaaatgttcctctaaaggtatccctttttggttggcgcctctttcggaatagattgcctatgaaggctaatttatttagacgggggatcattc |
16239042 |
T |
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| Q |
178 |
agcatga |
184 |
Q |
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| T |
16239043 |
agtatga |
16239049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 30406621 - 30406519
Alignment:
| Q |
75 |
ctatggaggaaagatgttcctcttaaggtcttagcttttgcttagcgactcttccgtaatagattgcctacgaaggcgaatttattaagaagggggatta |
174 |
Q |
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| T |
30406621 |
ctatggaggaaggaagttcctctgaaggtttcagtttttgcttggtgactttttcggaatagattgccaactaaggagaatttatttcgaagagggatta |
30406522 |
T |
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| Q |
175 |
ttc |
177 |
Q |
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||| |
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| T |
30406521 |
ttc |
30406519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 44665869 - 44665789
Alignment:
| Q |
110 |
ttttgcttagcgactcttccgtaatagattgcctacgaaggcgaatttattaagaagggggattattcagcatgattctca |
190 |
Q |
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| T |
44665869 |
ttttgcttggcgcctattctgtagtagattgcctaccaaggcaaatttatttcgtaggggaattattcagcatgatgctca |
44665789 |
T |
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