View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_536 (Length: 230)
Name: NF10954A_low_536
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_536 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32062648 - 32062875
Alignment:
| Q |
1 |
aggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatactt |
100 |
Q |
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| T |
32062648 |
aggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatactt |
32062747 |
T |
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| Q |
101 |
gcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaagtcaaaggaatcagatttatttgagccaactctccacacaaagg |
200 |
Q |
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| T |
32062748 |
gcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaagtcaaaggaatcagatttatttgagccaactctccacacaaagg |
32062847 |
T |
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| Q |
201 |
aagccatggatgacattaacatgatgtt |
228 |
Q |
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| T |
32062848 |
aagccatggatgacattaacatgatgtt |
32062875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 32062551 - 32062623
Alignment:
| Q |
39 |
tgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatga |
111 |
Q |
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| T |
32062551 |
tgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttttcaatccttgccgatgatga |
32062623 |
T |
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