View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_54 (Length: 412)
Name: NF10954A_low_54
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_54 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 45099455 - 45099062
Alignment:
| Q |
19 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
118 |
Q |
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| T |
45099455 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
45099356 |
T |
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| Q |
119 |
aatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
218 |
Q |
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| T |
45099355 |
aatgtaggaggtatgaaaataactccttttaatgacaccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
45099256 |
T |
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| Q |
219 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgacagctcaacagatgaatagagaaaa |
318 |
Q |
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| T |
45099255 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcgcctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
45099156 |
T |
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| Q |
319 |
ctcaagtttagcttcaaggtttaatatgacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatatt |
412 |
Q |
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| T |
45099155 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatatt |
45099062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 312
Target Start/End: Original strand, 17348638 - 17348855
Alignment:
| Q |
95 |
gttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttgg |
194 |
Q |
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| T |
17348638 |
gttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgataccctttggagaacatggattcctgataaggattttctgg |
17348737 |
T |
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| Q |
195 |
tttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgac |
294 |
Q |
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| T |
17348738 |
tttttaaggatgcagctaaggctgtagtgagcactcacacaccagattatcagaaagggggcgcggctagagagatcgcgccggatagtgtttatatgac |
17348837 |
T |
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| Q |
295 |
agctcaacagatgaatag |
312 |
Q |
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| T |
17348838 |
tgctcaggagatgaatag |
17348855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 17363885 - 17363945
Alignment:
| Q |
94 |
ggttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgat |
154 |
Q |
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| T |
17363885 |
ggttttagaaactattcataggattaacgttgatggtttgaaaataactccctttaatgat |
17363945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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