View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_542 (Length: 230)
Name: NF10954A_low_542
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_542 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34093057 - 34092828
Alignment:
| Q |
1 |
tcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaatagccaacgataat |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093057 |
tcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaatagccaacgataat |
34092958 |
T |
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| Q |
101 |
gatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaatctgactttggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34092957 |
gatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaatctgactttggc |
34092858 |
T |
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| Q |
201 |
aaagtttctcattgagaaaagtcctaatca |
230 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
34092857 |
aaagtttcttattgagaaaagtcctaatca |
34092828 |
T |
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