View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_544 (Length: 230)

Name: NF10954A_low_544
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_544
NF10954A_low_544
[»] chr8 (8 HSPs)
chr8 (1-230)||(5351588-5351817)
chr8 (1-227)||(14949440-14949666)
chr8 (1-227)||(15125709-15125935)
chr8 (12-227)||(5290288-5290503)
chr8 (12-227)||(5313688-5313903)
chr8 (12-167)||(5282701-5282856)
chr8 (16-167)||(11833226-11833377)
chr8 (16-227)||(5306480-5306691)
[»] chr6 (2 HSPs)
chr6 (12-230)||(31526411-31526629)
chr6 (42-110)||(11738952-11739020)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5351588 - 5351817
Alignment:
Q  1 agaagatatacatcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351588 agaagatatacatcagcatcattgtagactgctctagctagttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaa 5351687  T
Q  101 gatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351688 gatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgtt 5351787  T
Q  201 atcacgaattgttccactttgtatccatga 230  Q
    ||||||||||||||||||||||||||||||    
T  5351788 atcacgaattgttccactttgtatccatga 5351817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14949440 - 14949666
Alignment:
Q  1 agaagatatacatcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaa 100  Q
    |||||||| | ||||||||||||||||||||||||||| |  ||||| ||||||||||| |||||||||| |||||  |||||||  |||||||||||||    
T  14949440 agaagatagatatcagcatcattgtagactgctctagcaagctgaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaa 14949539  T
Q  101 gatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgtt 200  Q
    ||||||||||||||||| |||  |||||||| || |||||||| ||||| ||||| |||||||||||  |  | ||||||   || ||||||||||| ||    
T  14949540 gatcaccatggctaaaatcattgatatccttatctaaagcacaagctttaattgctttctcatatcttgttttgtccattgccttgccaaagagtatatt 14949639  T
Q  201 atcacgaattgttccactttgtatcca 227  Q
    |||  ||| ||||||||||||||||||    
T  14949640 atcttgaactgttccactttgtatcca 14949666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15125935 - 15125709
Alignment:
Q  1 agaagatatacatcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaa 100  Q
    |||||||| | ||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||| |||||  |||||||  |||||||||||||    
T  15125935 agaagatagatatcagcatcattgtagactgctctagctagttgaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaa 15125836  T
Q  101 gatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgtt 200  Q
    ||||||| ||||||||| |||| |||||||| || |||||||| ||||| ||||| |||||||||||  |  | ||||||   || ||||| ||||| ||    
T  15125835 gatcaccgtggctaaaatcatcgatatccttatctaaagcacaagctttaattgctttctcatatcttgttttgtccatttccttgccaaatagtatatt 15125736  T
Q  201 atcacgaattgttccactttgtatcca 227  Q
    |||  ||| ||||||||||||||||||    
T  15125735 atcttgaactgttccactttgtatcca 15125709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 5290288 - 5290503
Alignment:
Q  12 atcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatgg 111  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||| |||||  |||||||| || |||||||||||||||||||||    
T  5290288 atcagcatcattgtagactgctctagctagttgaatcctttgcttttgtcctccactcatgttaatccctctctgaccgatttctgtaagatcaccatgg 5290387  T
Q  112 ctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattg 211  Q
    |||||| |||  |||||||| || || ||||| ||||| ||||| |||||||||||  |  | ||||||   || ||||||||||| || ||  ||| ||    
T  5290388 ctaaaatcattgatatccttatctaaggcacaagctttgattgctttctcatatcttcttttatccattggcttgccaaagagtatattttcttgaactg 5290487  T
Q  212 ttccactttgtatcca 227  Q
    ||||||||||||||||    
T  5290488 ttccactttgtatcca 5290503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 5313903 - 5313688
Alignment:
Q  12 atcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatgg 111  Q
    ||||||||||||||||||||||||||| | |||||| |||||||| || |||||||| | |||||  |||||||| ||||||||||||||||| |||| |    
T  5313903 atcagcatcattgtagactgctctagctatttgaatcctttgcttctgtcctccacttacgttaatccctctctgacctatttctgtaagatcgccatag 5313804  T
Q  112 ctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaatt 210  Q
    |||||| |||| |||||||| || || |||||| |||| || |||||||||||| | ||| || ||||||   || ||||||||||| ||||| |||| |    
T  5313803 ctaaaatcatcaatatccttatctaaggcacatactttaatggcattctcatat-ttttctttgtccattggcttgccaaagagtatattatctcgaact 5313705  T
Q  211 gttccactttgtatcca 227  Q
    |||||||||||||||||    
T  5313704 gttccactttgtatcca 5313688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 5282701 - 5282856
Alignment:
Q  12 atcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatgg 111  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||| |  || |  |||||||| ||||||||||||||||||||||||    
T  5282701 atcagcatcattgtagactgctctagctagttgaatcctttgcttttgtcctccacttatattgatccctctctgacctatttctgtaagatcaccatgg 5282800  T
Q  112 ctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatct 167  Q
    || ||| |||  |||||||| || || ||||| ||||| ||||| |||||||||||    
T  5282801 ctgaaatcattgatatccttatctaaggcacaagctttaattgctttctcatatct 5282856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 11833377 - 11833226
Alignment:
Q  16 gcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaa 115  Q
    |||||||| |||||||||||||| | |||||| ||||||||||| |||||||| |  || |  |||||||| || |||||||||||||||||||||||||    
T  11833377 gcatcattatagactgctctagctagttgaatcctttgcttttgtcctccacttatattgatccctctctgaccaatttctgtaagatcaccatggctaa 11833278  T
Q  116 aaccatctatatccttgtccaaagcacatgcttttattgcattctcatatct 167  Q
    || |||  |||||||| |  || | ||| ||||| ||||| |||||||||||    
T  11833277 aatcattgatatccttatgtaaggaacaagctttaattgctttctcatatct 11833226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 5306691 - 5306480
Alignment:
Q  16 gcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaa 115  Q
    |||||| |||||||||||||||| | |||||| || |||||||| ||||||||||  || |  |||||||| || ||||||||||||||||||||||| |    
T  5306691 gcatcactgtagactgctctagctagttgaatcctctgcttttgtcctccactcatattgatccctctctggccaatttctgtaagatcaccatggctga 5306592  T
Q  116 aaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttcc 215  Q
    || |||  |  ||||| || |||||||| ||||| ||||| || | ||||||  |  | ||||||   || ||||||||||| || ||  ||| ||||||    
T  5306591 aatcattgaagtccttatctaaagcacaagctttaattgctttttgatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttcc 5306492  T
Q  216 actttgtatcca 227  Q
    ||||||||||||    
T  5306491 actttgtatcca 5306480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 31526411 - 31526629
Alignment:
Q  12 atcagcatcattgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatgg 111  Q
    ||||||||| ||||| ||||||| ||| | |||||| ||||||||||| |||||||| | |||||  ||||| || |||||||||||||||||||||||     
T  31526411 atcagcatcgttgtaaactgctcgagctagttgaatcctttgcttttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatga 31526510  T
Q  112 ctaaaaccatctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaatt 210  Q
    || ||| |||  ||||| | |||||| ||||| ||||| || |||||||||||||| | | || | ||||   || ||||||||||| ||||| ||||      
T  31526511 ctcaaatcattgatatcttcgtccaaggcacaagctttaatagcattctcatatct-tgctttgttcattggcttgccaaagagtatattatctcgaacg 31526609  T
Q  211 gttccactttgtatccatga 230  Q
    ||||||||||||||||||||    
T  31526610 gttccactttgtatccatga 31526629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 11738952 - 11739020
Alignment:
Q  42 ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatg 110  Q
    |||||||| ||||||||| || ||||||||||||| |||||||| ||| ||||| || |||||||||||    
T  11738952 ttgaattcgttgcttttgacccccactcaagttaactcctctctctccaatttcagtgagatcaccatg 11739020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University