View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_547 (Length: 230)
Name: NF10954A_low_547
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_547 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 20669995 - 20669778
Alignment:
| Q |
8 |
tcctccttcagccgcatgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttagga |
107 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||| |
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| T |
20669995 |
tcctccttcagccgcatgaatatacaaaacttgagcctcgtgctcgtctgtgttattttcttggttatggcattgaacataaaggttatcaatgttagga |
20669896 |
T |
|
| Q |
108 |
tccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctat |
207 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20669895 |
tccaatatctcagcgcattcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctat |
20669796 |
T |
|
| Q |
208 |
acttctctctttactaac |
225 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
20669795 |
actcctctctttactaac |
20669778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 5241792 - 5241575
Alignment:
| Q |
8 |
tcctccttcagccgcatgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttagga |
107 |
Q |
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||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||| ||||||||| ||| |||| ||| |||||| ||||| ||| |
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| T |
5241792 |
tcctccttcagccccatgagtatactaaacttgagcctcgtgctcgtctgtgtcgttttcttggttatggaactaaacacaaaggttatcgatgttggga |
5241693 |
T |
|
| Q |
108 |
tccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctat |
207 |
Q |
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||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
5241692 |
tccaatatcgcaacgcattcgcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttcc |
5241593 |
T |
|
| Q |
208 |
acttctctctttactaac |
225 |
Q |
| |
|
||| |||||||||||||| |
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| T |
5241592 |
actcctctctttactaac |
5241575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 17451301 - 17451475
Alignment:
| Q |
8 |
tcctccttcagccgcatgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttagga |
107 |
Q |
| |
|
||||||| || || || ||| |||| ||||| ||||||||||| |||||||||| ||||| ||||||||| | |||||||||| |||||| ||||| ||| |
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| T |
17451301 |
tcctcctccaaccccacgaacatactaaacttgagcctcgtgcccgtctttgttgttttcttggttatggtattgaacataaaggttatcgatgttggga |
17451400 |
T |
|
| Q |
108 |
tccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaa |
182 |
Q |
| |
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||| || ||| | |||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
17451401 |
tcccatttctcaacgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaa |
17451475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 14826039 - 14826219
Alignment:
| Q |
23 |
atgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttaggatccaatatcttagcg |
122 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| | ||| |||| ||||| |||||||| | |||||| ||| ||| | ||||| ||| || ||||| | | |
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| T |
14826039 |
atgaatatactaaactagagccacgtgcccatctctgttgttttctaggttatggaaatgaacacaaaggtttccgatgttgggaccctatatcccaatg |
14826138 |
T |
|
| Q |
123 |
cactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctac |
203 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||| ||||| |
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|
| T |
14826139 |
cattcgtatttctcgtcatgttgtcttttgggaacacataatgttctcttctttgtcaaagtttacgtcaatcccatctac |
14826219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 53017065 - 53016849
Alignment:
| Q |
8 |
tcctccttcagccgcatgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttagga |
107 |
Q |
| |
|
|||||||||| || ||||| | ||| ||||| ||||||| ||||||||| |||| ||||| ||||||||||||| |||| ||| | |||| ||||||||| |
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| T |
53017065 |
tcctccttcaaccccatgagtttactaaacttgagcctcatgctcgtctgtgttgttttcttggttatggcacttaacacaaaggctatcgatgttagga |
53016966 |
T |
|
| Q |
108 |
tccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctat |
207 |
Q |
| |
|
||||||||| | |||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
53016965 |
tccaatatcccaacgcatt-gcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttcc |
53016867 |
T |
|
| Q |
208 |
acttctctctttactaac |
225 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
53016866 |
actcctctctttactaac |
53016849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 29991109 - 29991289
Alignment:
| Q |
8 |
tcctccttcagccgcatgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttagga |
107 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||||||||| |||| ||||| |||||||| ||||||||| ||| |||||| ||||| ||| |
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|
| T |
29991109 |
tcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatgacactgaacacaaaggttatcgatgttggga |
29991208 |
T |
|
| Q |
108 |
tccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaa |
188 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29991209 |
tccaatatcccagcgcattcgcacctctcgtcatgttatcttttgcgaacatataatgttctcttccttatcaaagtttaa |
29991289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 24432252 - 24432426
Alignment:
| Q |
8 |
tcctccttcagccgcatgaatatacaaaactggagcctcgtgctcgtctttgttattttcgtggttatggcactgaacataaatgttatcaatgttagga |
107 |
Q |
| |
|
||||||| || || || ||| |||| ||||| ||||||||||| |||||||||| ||||| ||||||||| | |||||||||| |||||| ||||| ||| |
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|
| T |
24432252 |
tcctcctccaaccccacgaacatactaaacttgagcctcgtgcccgtctttgttgttttcttggttatggtattgaacataaaggttatcgatgttggga |
24432351 |
T |
|
| Q |
108 |
tccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaa |
182 |
Q |
| |
|
||| || ||| | |||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
24432352 |
tcccatttctcaacgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaa |
24432426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 16503198 - 16503365
Alignment:
| Q |
58 |
tgttattttcgtggttatggcactgaacataaatgttatcaatgttaggatccaatatcttagcgcactcgcatctctcgtcatgttgtcttttgggaac |
157 |
Q |
| |
|
|||| ||||| ||||||||| |||||||| ||| || ||| ||||| ||| || |||||| | |||| ||| |||||| ||||||||||||||||||| |
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|
| T |
16503198 |
tgttgttttcttggttatggtactgaacacaaaggtcatcgatgttgggacccgatatctcaacgcattcgtgtctctcaacatgttgtcttttgggaac |
16503297 |
T |
|
| Q |
158 |
atataatgttctcttccttatcaaagtttaagtcaatcccgtctacctatacttctctctttactaac |
225 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| | ||| |||||||||||||| |
|
|
| T |
16503298 |
atataatgttctcttccttgtcaaagtttaagtcaattccgtctacttcgactcctctctttactaac |
16503365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 12546372 - 12546433
Alignment:
| Q |
133 |
tctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaat |
194 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
12546372 |
tctcgacatgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaat |
12546433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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