View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_550 (Length: 230)
Name: NF10954A_low_550
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_550 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 15007604 - 15007815
Alignment:
| Q |
13 |
gaacaatatatagcagctggtattataaca-----gatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaatttt |
107 |
Q |
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| T |
15007604 |
gaacaatatatagcagctggtattataacattgaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaatttt |
15007703 |
T |
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| Q |
108 |
ctataattgtcttttagttatgcctcataattcaaatcatgtga---agttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
204 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | ||||||| |
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| T |
15007704 |
ctataattgtcttttagttaggcctcataattcaaatcatgtgaattagttcaaataaattttcgcatgaacttaaggtaatattgattcacattacttc |
15007803 |
T |
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| Q |
205 |
tttttatgatgt |
216 |
Q |
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|||||| ||||| |
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| T |
15007804 |
tttttacgatgt |
15007815 |
T |
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Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 40787228 - 40787422
Alignment:
| Q |
13 |
gaacaatatatagcagctggtattataacaga---tattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttct |
109 |
Q |
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| T |
40787228 |
gaacaatatatagcagctggtattataacagaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattt--- |
40787324 |
T |
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| Q |
110 |
ataattgtcttttagttatgcctcataattcaaatcatgtgaagttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttcttttt |
209 |
Q |
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| T |
40787325 |
-------tcatttagttatgcctcataattcaaatcatgtgaagtttaaataaattttcgcatgatcttgaggtaatattgattctcattacttcttttt |
40787417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 21143251 - 21143292
Alignment:
| Q |
175 |
acttgaggtaatattgattctcgttacttctttttatgatgt |
216 |
Q |
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| T |
21143251 |
acttgtggtaatattgattctcgttacttctttttatgatgt |
21143292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 52311151 - 52311116
Alignment:
| Q |
175 |
acttgaggtaatattgattctcgttacttcttttta |
210 |
Q |
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| T |
52311151 |
acttgaggtaatattgattctcgttacttcttttta |
52311116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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