View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_552 (Length: 230)
Name: NF10954A_low_552
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_552 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30287132 - 30286909
Alignment:
| Q |
1 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287132 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaa |
30287033 |
T |
|
| Q |
101 |
tgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaaga |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287032 |
tgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaaga |
30286933 |
T |
|
| Q |
201 |
gactgagtgagaatacagtatacc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
30286932 |
gactgagtgagaatacagtatacc |
30286909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30292166 - 30291943
Alignment:
| Q |
1 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292166 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaa |
30292067 |
T |
|
| Q |
101 |
tgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaaga |
200 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292066 |
tgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaaga |
30291967 |
T |
|
| Q |
201 |
gactgagtgagaatacagtatacc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
30291966 |
gactgagtgagaatacagtatacc |
30291943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30304800 - 30304577
Alignment:
| Q |
1 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304800 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaa |
30304701 |
T |
|
| Q |
101 |
tgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaaga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304700 |
tgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaaga |
30304601 |
T |
|
| Q |
201 |
gactgagtgagaatacagtatacc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
30304600 |
gactgagtgagaatacagtatacc |
30304577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 30315651 - 30315494
Alignment:
| Q |
69 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggta |
168 |
Q |
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||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| |
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| T |
30315651 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatataggctacattcaatttaatttaattttggta |
30315552 |
T |
|
| Q |
169 |
ggaaactattgtaattaggccataca----gaaagagactgagtgagaatacagtata |
222 |
Q |
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| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
30315551 |
gaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtata |
30315494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30300008 - 30299930
Alignment:
| Q |
1 |
attgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagta |
80 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| || ||||| ||||||| |
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| T |
30300008 |
attgtcttcctcaccttcaaatttgaaatcacacaaaaa-taaacatatcttaattagattttactcattcatttaagta |
30299930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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