View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_554 (Length: 230)
Name: NF10954A_low_554
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_554 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| |
|
| [»] chr2 (5 HSPs) |
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|
Alignment Details
Target: scaffold0649 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 295 - 524
Alignment:
| Q |
1 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
295 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaaaattgatggcacatactcagctatcctataatttttgtattt |
394 |
T |
|
| Q |
101 |
catgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
395 |
catgcaagaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacaacatacttgtctccagtg |
494 |
T |
|
| Q |
201 |
tttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
495 |
tttgacatatgtataacttggaaatcatga |
524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43017908 - 43017679
Alignment:
| Q |
1 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43017908 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaaaattgatggcacatagtcagctatcctgtaatttttgtattt |
43017809 |
T |
|
| Q |
101 |
catgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtg |
200 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
43017808 |
catgcaagaaatgacatgacagcatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgatagcgtacttgtctccagtg |
43017709 |
T |
|
| Q |
201 |
tttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43017708 |
cttgacatatgtataacttggaaatcatga |
43017679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15810612 - 15810841
Alignment:
| Q |
1 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
15810612 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctctttttttaaaattgatggcacatagtcagctatcctataatttttgtgttt |
15810711 |
T |
|
| Q |
101 |
catgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtg |
200 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15810712 |
catgcaagaaatggcatgacaaaatggtagtcctgtcaacaaccatttcctacaatcacacactttgtccaacaagttgacatcatacttgtctccagtg |
15810811 |
T |
|
| Q |
201 |
tttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
15810812 |
cttgacatatatataacttggaaatcatga |
15810841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27655842 - 27655615
Alignment:
| Q |
1 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtattt |
100 |
Q |
| |
|
||||||| || ||||||||| ||||||| |||||| | |||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||| || || |
|
|
| T |
27655842 |
ggccatttattgggaaaatgttgctggagtaacattctgcatattgctctttcttgaatattgatggcacataatcagctatcttgtaatttttatactt |
27655743 |
T |
|
| Q |
101 |
catgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtg |
200 |
Q |
| |
|
|||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
27655742 |
catgcaagcaatggcatgacagcatggcagtcctgtcaacaaccatttcctgcaatcacaaattttgttcaacaagtttacagcaaacttgtctccagtc |
27655643 |
T |
|
| Q |
201 |
tttgacatatgtataacttggaaatcat |
228 |
Q |
| |
|
| |||||||||| |||| |||||||||| |
|
|
| T |
27655642 |
tgtgacatatgtgtaacctggaaatcat |
27655615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21543006 - 21543233
Alignment:
| Q |
1 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtattt |
100 |
Q |
| |
|
||||||| || || |||||||||||||| |||||| | |||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
21543006 |
ggccatttattggaaaaatgatgctggagtaacattctgcatattgctctttcttgaatattgatggcacatagtcaactatattgtaatttttgtactt |
21543105 |
T |
|
| Q |
101 |
catgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtg |
200 |
Q |
| |
|
|||||| | |||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||| || ||| || |||||| ||||||||| ||| |
|
|
| T |
21543106 |
catgcaagcaatggcatgacatcatggcagtcctgtcaacaaccattttctgcaatcacaaactttgttcatcaaatttacagcaaacttgtctctagta |
21543205 |
T |
|
| Q |
201 |
tttgacatatgtataacttggaaatcat |
228 |
Q |
| |
|
| |||||||||| |||| || ||||||| |
|
|
| T |
21543206 |
tgtgacatatgtgtaacctgaaaatcat |
21543233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 25561339 - 25561400
Alignment:
| Q |
99 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcaca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
25561339 |
ttcatgcaggaaatggcatgacaacatggtaaacctgtcaacaaccatctcctacaatcaca |
25561400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 11386844 - 11386620
Alignment:
| Q |
4 |
cattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcat |
103 |
Q |
| |
|
|||||| ||| | ||| ||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||| || ||||||| ||||| |
|
|
| T |
11386844 |
cattgacaggaagaattatgctggaataacatgcagcatactgctcttttttgaatattggtggaacatagtcagctatcctatagtttttgtgcttcat |
11386745 |
T |
|
| Q |
104 |
gcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgttt |
203 |
Q |
| |
|
||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11386744 |
gcaagcaatggcatgacaacatggaagtcctgtcaatagccatttcctgcaatcacatactttatccaacaagtttacagcatatttgtctccagtgttt |
11386645 |
T |
|
| Q |
204 |
gacatatgtataacttggaaatcat |
228 |
Q |
| |
|
|| |||||| ||||||| ||||||| |
|
|
| T |
11386644 |
gaaatatgtgtaacttgtaaatcat |
11386620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 26450332 - 26450166
Alignment:
| Q |
64 |
atggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacaca- |
162 |
Q |
| |
|
|||| ||||||||||| || |||||| ||||| ||||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
26450332 |
atggtacatagtcagcaatgttgtaatgtttgtgtttcatgcaagcaatggcatgacagcatggaagtcctgtcaaattccatttcctgcaatcacacag |
26450233 |
T |
|
| Q |
163 |
ctttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
| |||| | |||||| ||||||||||||||||||| ||||| | ||| || ||||||||||||||| |
|
|
| T |
26450232 |
cattgt-ctgcaagttaacagcatacttgtctccagaatttgagagatgaatcacttggaaatcatga |
26450166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 19836484 - 19836423
Alignment:
| Q |
99 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcaca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19836484 |
ttcatgcaggaaatggcatgacaacatggtaagcctgtcaacaaccatttcctacaatcaca |
19836423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 21775857 - 21775897
Alignment:
| Q |
99 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaa |
139 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
21775857 |
ttcatgcaggagatggcatgacaacatggcaatcctgtcaa |
21775897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 21792490 - 21792714
Alignment:
| Q |
4 |
cattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcat |
103 |
Q |
| |
|
|||||| ||| | ||| ||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||| || ||||||| ||||| |
|
|
| T |
21792490 |
cattgacaggaagaattatgctggaataacatgcagcatactgctcttttttgaatattggtggaacatagtcagctatcctatagtttttgtgcttcat |
21792589 |
T |
|
| Q |
104 |
gcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgttt |
203 |
Q |
| |
|
||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
21792590 |
gcaagcaatggcatgacaacatggaagtcctgtcaatagccatttcctgcaatcacatactttatccaacaagtttacagcatatttgtctccagtgttt |
21792689 |
T |
|
| Q |
204 |
gacatatgtataacttggaaatcat |
228 |
Q |
| |
|
|| |||||| ||||||| ||||||| |
|
|
| T |
21792690 |
gaaatatgtgtaacttgaaaatcat |
21792714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 32413870 - 32414057
Alignment:
| Q |
3 |
ccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttca |
102 |
Q |
| |
|
||||| || ||||||||||||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
32413870 |
ccatttattgggaaaatgatgctggagtaacattctgcatattgctctttcttgaatattgatggcacatagtcagctatgttgtaatttttgtacttca |
32413969 |
T |
|
| Q |
103 |
tgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatactt |
190 |
Q |
| |
|
|||| | |||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||| || |||||| |||||| |||| |
|
|
| T |
32413970 |
tgcaagcaatgtcatgacagcatgacagtcctgtcaacaaccatttcctgcaatcacaaactttgttcatcaagtttacagcaaactt |
32414057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 21008186 - 21008347
Alignment:
| Q |
69 |
acatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacaca-ctttg |
167 |
Q |
| |
|
||||||||||| || |||||| ||||| ||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
21008186 |
acatagtcagcaatgttgtaatgtttgtgtttcatgcaagcaatggcatgacaacatggaagtcctgtcaaattccatttcctgcaatcacacaccattg |
21008285 |
T |
|
| Q |
168 |
tccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
| | |||||| ||| ||||||||||||||| ||||| | ||| || ||||||||||||||| |
|
|
| T |
21008286 |
t-ctgcaagttaacaacatacttgtctccagaatttgagagatggatcacttggaaatcatga |
21008347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 24506969 - 24506906
Alignment:
| Q |
100 |
tcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacac |
163 |
Q |
| |
|
|||||||||||||||||||||| || || | |||||||| ||||||||||| || |||||||| |
|
|
| T |
24506969 |
tcatgcaggaaatggcatgacagcagggcaaccctgtcaataaccatttcctacagtcacacac |
24506906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 23332179 - 23332139
Alignment:
| Q |
99 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaa |
139 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
23332179 |
ttcatgcaggagatggcatgacaacatggcaatcctgtcaa |
23332139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 7563742 - 7563967
Alignment:
| Q |
3 |
ccattgatagggaaaatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttca |
102 |
Q |
| |
|
||||| || ||||||||||||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
7563742 |
ccatttattgggaaaatgatgctggagtaacattctgcatattgctctttcttgaatattgatggcacatagtcagctatgttgtaatttttgtacttca |
7563841 |
T |
|
| Q |
103 |
tgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtt |
202 |
Q |
| |
|
|||| | |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||| | |
|
|
| T |
7563842 |
tgcaagcaatgtcatgacatcatgtcagtcctgtcaacaaccatttcctgcaatcacacactttgttcatcaagtttacagcaaacttgtctccagtctg |
7563941 |
T |
|
| Q |
203 |
tgacatatgtataacttggaaatcat |
228 |
Q |
| |
|
|||||||||| |||| || ||||||| |
|
|
| T |
7563942 |
tgacatatgtgtaacctgaaaatcat |
7563967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 43581427 - 43581266
Alignment:
| Q |
69 |
acatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacaca-ctttg |
167 |
Q |
| |
|
||||||||||| || |||||| ||||| ||||||||| | ||||| |||||||||||| ||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
43581427 |
acatagtcagcaatgttgtaatatttgtgtttcatgcaagcaatgggatgacaacatggaagtcctgtcaaattccatttcctgcaatcacacaccattg |
43581328 |
T |
|
| Q |
168 |
tccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
| | |||||| ||||||||||||||||||| ||||| | ||| || ||||||||||||||| |
|
|
| T |
43581327 |
t-ctgcaagttaacagcatacttgtctccagaatttgagagatggatcacttggaaatcatga |
43581266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 24746299 - 24746465
Alignment:
| Q |
64 |
atggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacac-a |
162 |
Q |
| |
|
|||| ||||||||||| || |||||| ||||| ||||||||| | |||||||||||| |||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
24746299 |
atggtacatagtcagcaatgttgtaatgtttgtgtttcatgcaagcaatggcatgacagcatgaaagtcctgtcaaattccatttcctgcaatcacacaa |
24746398 |
T |
|
| Q |
163 |
ctttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatga |
230 |
Q |
| |
|
| |||| | |||||| ||| ||||||||||||||| ||||| | ||| || |||||||| |||||| |
|
|
| T |
24746399 |
cattgt-ctgcaagttaacaacatacttgtctccagaatttgagagatgaatcacttggaattcatga |
24746465 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8511848 - 8511798
Alignment:
| Q |
1 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctctt |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8511848 |
ggccattgatagggaaaatgatgctggaataacatgcagcatattgctctt |
8511798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 37101500 - 37101561
Alignment:
| Q |
99 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcaca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
37101500 |
ttcatgcaggaaatggcatgacaacatggtaaacctgtcaacaaccatctcctacaatcaca |
37101561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 20623796 - 20623756
Alignment:
| Q |
99 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaa |
139 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
20623796 |
ttcatgcaggagatggcatgacaacatggcaatcctgtcaa |
20623756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 20067847 - 20067786
Alignment:
| Q |
100 |
tcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacac |
161 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||| | ||||||||| || |||||| |
|
|
| T |
20067847 |
tcatgcaggaaatggcatgacagcatggcaaacctgtcaaaagccatttcctacagtcacac |
20067786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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