View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_555 (Length: 230)
Name: NF10954A_low_555
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_555 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31762755 - 31762984
Alignment:
| Q |
1 |
atgatccaataatcttagaaaatatttgatagaagaaaccaaaccaactcaacactgccttccatgcttgctgagttatcggtgagtacatgacaatcaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31762755 |
atgatccaataatctgagaaaatatttgatagaagaaaccaaaccaactcaacactgccttccatgcttgctgagttattggtgagtacatgacaatcaa |
31762854 |
T |
|
| Q |
101 |
caatgttatgttataccttaaaataatttgtttaaggtttgtgatgtagcttgatgcatacgctattaaatattaacgtttgtttcactcaccttttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31762855 |
caatgttatgttataccttaaaataatttgtttaaggtttgtgatgtagcttgatgcatacgctattaaatattaacgtttgtttcactcaccttttgtt |
31762954 |
T |
|
| Q |
201 |
tctcaatatattttgttggtttgttatgtg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31762955 |
tctcaatatattttgttggtttgttatgtg |
31762984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University