View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_561 (Length: 230)

Name: NF10954A_low_561
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_561
NF10954A_low_561
[»] chr1 (15 HSPs)
chr1 (1-225)||(3877215-3877433)
chr1 (5-205)||(43241167-43241368)
chr1 (21-212)||(35829195-35829387)
chr1 (5-205)||(49348180-49348381)
chr1 (5-205)||(51441550-51441751)
chr1 (5-91)||(32083531-32083617)
chr1 (21-213)||(34827888-34828080)
chr1 (14-133)||(37463657-37463777)
chr1 (5-96)||(51601463-51601554)
chr1 (5-205)||(8671216-8671416)
chr1 (15-70)||(13027297-13027352)
chr1 (39-133)||(40419049-40419143)
chr1 (21-112)||(46227106-46227198)
chr1 (5-86)||(7813911-7813991)
chr1 (67-162)||(16142675-16142771)
[»] chr8 (10 HSPs)
chr8 (15-172)||(15216068-15216226)
chr8 (5-205)||(36566027-36566228)
chr8 (5-172)||(42854799-42854967)
chr8 (15-205)||(36544447-36544638)
chr8 (5-133)||(12492628-12492757)
chr8 (5-133)||(41445089-41445219)
chr8 (56-132)||(3284861-3284938)
chr8 (12-82)||(30579021-30579092)
chr8 (6-74)||(11130727-11130796)
chr8 (14-82)||(38666986-38667054)
[»] chr3 (11 HSPs)
chr3 (5-205)||(51448495-51448696)
chr3 (15-205)||(52138123-52138314)
chr3 (1-114)||(29816891-29817005)
chr3 (17-93)||(9258294-9258370)
chr3 (23-211)||(48221070-48221259)
chr3 (5-205)||(38849389-38849590)
chr3 (33-96)||(50630135-50630198)
chr3 (15-81)||(26592236-26592302)
chr3 (1-53)||(19736614-19736666)
chr3 (1-53)||(19757432-19757484)
chr3 (5-53)||(25190827-25190875)
[»] chr7 (18 HSPs)
chr7 (5-205)||(11593248-11593449)
chr7 (5-205)||(46356637-46356838)
chr7 (5-205)||(49028576-49028777)
chr7 (5-162)||(32629946-32630104)
chr7 (5-133)||(33350592-33350721)
chr7 (5-205)||(36651289-36651490)
chr7 (5-133)||(39907165-39907294)
chr7 (5-94)||(36870075-36870164)
chr7 (22-162)||(38896949-38897090)
chr7 (14-161)||(24426284-24426432)
chr7 (6-123)||(43793819-43793938)
chr7 (14-123)||(38606415-38606525)
chr7 (25-123)||(20499486-20499585)
chr7 (7-96)||(24177983-24178072)
chr7 (25-133)||(48055623-48055732)
chr7 (15-74)||(21520229-21520288)
chr7 (5-74)||(23087901-23087970)
chr7 (5-53)||(31004672-31004720)
[»] chr4 (21 HSPs)
chr4 (14-205)||(23907097-23907289)
chr4 (5-225)||(39707738-39707958)
chr4 (14-205)||(435527-435719)
chr4 (5-132)||(1212093-1212221)
chr4 (21-170)||(1777817-1777967)
chr4 (60-205)||(53703905-53704051)
chr4 (5-86)||(17666811-17666892)
chr4 (5-133)||(48623313-48623442)
chr4 (14-133)||(27450968-27451088)
chr4 (14-82)||(42037327-42037395)
chr4 (14-114)||(3272815-3272916)
chr4 (14-65)||(16002350-16002401)
chr4 (38-135)||(10776238-10776336)
chr4 (40-86)||(55769198-55769244)
chr4 (5-86)||(17668109-17668190)
chr4 (14-86)||(21060188-21060260)
chr4 (36-94)||(20917413-20917471)
chr4 (40-86)||(55833454-55833500)
chr4 (14-95)||(15183461-15183542)
chr4 (5-54)||(53707241-53707290)
chr4 (5-54)||(56374737-56374786)
[»] chr2 (16 HSPs)
chr2 (5-198)||(24584392-24584586)
chr2 (5-225)||(2609803-2610024)
chr2 (15-162)||(452412-452560)
chr2 (5-162)||(38453404-38453562)
chr2 (5-205)||(45368411-45368612)
chr2 (5-196)||(8180099-8180291)
chr2 (21-133)||(876521-876634)
chr2 (39-132)||(16292081-16292175)
chr2 (1-82)||(13148741-13148822)
chr2 (5-94)||(12475207-12475296)
chr2 (15-122)||(14769676-14769785)
chr2 (35-86)||(13593172-13593223)
chr2 (5-81)||(7135457-7135533)
chr2 (42-77)||(33595091-33595126)
chr2 (12-70)||(34502106-34502164)
chr2 (15-79)||(7789347-7789411)
[»] chr6 (12 HSPs)
chr6 (5-205)||(6082695-6082896)
chr6 (15-172)||(9706103-9706261)
chr6 (5-162)||(30670226-30670384)
chr6 (23-139)||(2208206-2208323)
chr6 (40-162)||(3629568-3629691)
chr6 (5-130)||(5258936-5259063)
chr6 (14-94)||(5631224-5631304)
chr6 (5-132)||(20428423-20428551)
chr6 (22-94)||(2680853-2680926)
chr6 (15-92)||(9369197-9369274)
chr6 (5-79)||(33495629-33495703)
chr6 (16-135)||(27790521-27790641)
[»] chr5 (19 HSPs)
chr5 (5-196)||(2076260-2076452)
chr5 (5-205)||(1288375-1288576)
chr5 (5-205)||(1274560-1274761)
chr5 (5-205)||(24177819-24178020)
chr5 (1-133)||(3394078-3394211)
chr5 (5-196)||(20318295-20318487)
chr5 (14-135)||(27296-27417)
chr5 (5-132)||(12493148-12493276)
chr5 (3-96)||(3301254-3301347)
chr5 (5-96)||(10638703-10638794)
chr5 (5-86)||(28977643-28977724)
chr5 (16-162)||(40383794-40383941)
chr5 (16-70)||(14099757-14099811)
chr5 (40-133)||(31502868-31502962)
chr5 (14-123)||(37123946-37124056)
chr5 (21-83)||(43558608-43558670)
chr5 (15-86)||(35685270-35685340)
chr5 (21-70)||(3096625-3096674)
chr5 (24-64)||(16134841-16134881)
[»] scaffold0018 (1 HSPs)
scaffold0018 (5-205)||(30763-30964)
[»] scaffold0286 (1 HSPs)
scaffold0286 (23-139)||(305-422)
[»] scaffold0045 (1 HSPs)
scaffold0045 (45-139)||(88760-88855)
[»] scaffold0606 (1 HSPs)
scaffold0606 (38-140)||(9028-9131)
[»] scaffold0220 (1 HSPs)
scaffold0220 (26-86)||(25020-25080)
[»] scaffold0113 (1 HSPs)
scaffold0113 (5-69)||(12378-12442)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3877433 - 3877215
Alignment:
Q  1 actgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttaggttga 100  Q
    ||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3877433 actgcatcattttcaaaaaacatacatctcgatcctagctc------gtgttctataagtacatccaaaactaaggtaaaaagatatggactaaggttga 3877340  T
Q  101 tccttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |    
T  3877339 tccttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacactagttgaagcctcctagtagatgtccttgatagctcaa 3877240  T
Q  201 atataagtaatccatactcctttct 225  Q
    ||||||||||||| |||||||||||    
T  3877239 atataagtaatccttactcctttct 3877215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 43241167 - 43241368
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  43241167 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 43241266  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||||||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  43241267 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcgtgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 43241366  T
Q  204 ta 205  Q
    ||    
T  43241367 ta 43241368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 35829195 - 35829387
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactt-aggttgatccttgatgcaatcatatt 119  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| || ||| |||||| ||| || |||||||||| ||||||| ||||    
T  35829195 catacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctatt 35829294  T
Q  120 gttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatataagtaatc 212  Q
    |||| ||||||||||| || |||| |||| || || ||||||| |||||||| | |||  | ||| |  ||||||||||||| ||||| ||||    
T  35829295 gttatgggaaaatcgtcggcgaccccatcttgtgtactcacactagttgaagtcccctcatgcatatatttgatagctcgaacataagcaatc 35829387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 49348180 - 49348381
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| || ||| ||    
T  49348180 catcatctacaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggctgaccc 49348279  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  49348280 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcatgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 49348379  T
Q  204 ta 205  Q
    ||    
T  49348380 ta 49348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 51441550 - 51441751
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| | ||||||||| ||||||| |||||| ||    
T  51441550 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagaaaaaagataaggacttagggttgaccc 51441649  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||| ||||||||||||| | | |||||  |||  ||||| ||||||||||| | ||||    
T  51441650 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcttgcgtcctcacactaatcgaagctccctcatacatatccttgatagccctaata 51441749  T
Q  204 ta 205  Q
    ||    
T  51441750 ta 51441751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 32083531 - 32083617
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggac 91  Q
    |||||||| |||||| ||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| ||||||||||| ||||    
T  32083531 catcatttgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagtaaaaagataaggac 32083617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 34827888 - 34828080
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactt-aggttgatccttgatgcaatcatatt 119  Q
    |||| |||| ||||||| |||||||||||||| | |||| |||||||||||||| |||||||  || || ||| || |||||||||| ||||| | ||||    
T  34827888 cataaatcttgatgctaactcttggatgtgttatgtaagaacatccaaaactaaagtaaaaaagtaaggtcttaagattgatccttg-tgcaagcctatt 34827986  T
Q  120 gttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatataagtaatcc 213  Q
    ||||  |||||||| ||||| |||||||| || |||||||||| ||| || ||| |||  ||||| || | ||||| ||||||||||| |||||    
T  34827987 gttattggaaaatcattggtaacctcatcttgagtcctcacactagtggaggccccctcatacatatcttggatagatcgaatataagcaatcc 34828080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 37463657 - 37463777
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| ||||||||||| ||||| |||||||||||||||  |||| |||||||||||||| |||||||| || || |||| |||||| ||||| |||||    
T  37463657 caaaaagcatacatctcggtgctaactcttggatgtgttccgtaagaacatccaaaactaaagtaaaaaggtaagggcttagggttgacccttggtgcaa 37463756  T
Q  113 tcatattgttacgggaaaatc 133  Q
    || ||||||||  ||||||||    
T  37463757 tcctattgttataggaaaatc 37463777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 51601554 - 51601463
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg 96  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| |||||||||||||||||||||    
T  51601554 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagatatggacttagg 51601463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 8671416 - 8671216
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||| ||||||||| ||||||||||| ||||||| |||||| ||    
T  8671416 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacat-caaaactaaagtaaaaagataaggacttagggttgaccc 8671318  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    | | ||||||  |||||||| ||||||||| | | |   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  8671317 taggtgcaattctattgttatgggaaaatcttcgatagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 8671218  T
Q  204 ta 205  Q
    ||    
T  8671217 ta 8671216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 13027297 - 13027352
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaa 70  Q
    ||||||||||||||||  ||||||||||||||||| |||| |||||||||||||||    
T  13027297 aaaaaacatacatctcagtgctagctcttggatgttttctgtaagtacatccaaaa 13027352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 40419143 - 40419049
Alignment:
Q  39 ctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag-gttgatccttgatgcaatcatattgttacgggaaaatc 133  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||| |  ||||| ||||| | ||| ||||||| |||||||| |||||||||    
T  40419143 ctcttggatgtgttccgtaagtacatccaaaactaaggtgaaaagataagtgcttagtgttgaacattggtgcaatc-tattgttatgggaaaatc 40419049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 46227106 - 46227198
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    ||||||||| | ||||| |||||||| |||||   ||||||||||||||||||| |||||||| || || |||| |||||||||||| |||||    
T  46227106 catacatcttggtgctaactcttggacgtgtttcgtaagtacatccaaaactaaagtaaaaaggtaagggcttagggttgatccttggtgcaa 46227198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 7813991 - 7813911
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||| | ||||||||||||||||| ||| ||  |||||||| |||| | |||||||||||||||||||  ||||||||||    
T  7813991 catcatctgcaaaaaacatacatctcaatgttaattcttggat-tgttttttaagtacatccaaaactaaaataaaaagata 7813911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 16142675 - 16142771
Alignment:
Q  67 aaaactaaggtaaaaagatatggacttaggtt-gatccttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    |||||||| ||||||||||| || |||||||| || | ||||||||||| |||||||||| |||||| |||| | | |||||| | | |||||||||    
T  16142675 aaaactaaagtaaaaagataaggtcttaggtttgacctttgatgcaatcctattgttacgagaaaattgttgataatctcatcttacatcctcacac 16142771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 15216068 - 15216226
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaat 113  Q
    ||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||| |    
T  15216068 aaaaaacatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagtaaaaagataaggacttagggttgatccttggtgcagt 15216167  T
Q  114 catattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagc 172  Q
    | |||||||| |||||||||   |||  ||||||| ||||||||||||| ||| |||||    
T  15216168 cctattgttatgggaaaatctacggtatcctcatcctgcgtcctcacactagtcgaagc 15216226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 36566027 - 36566228
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  36566027 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 36566126  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| |  ||   |||||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  36566127 ttggtgcaatcctattgttatgggaaaatcttcagtagtctcatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 36566226  T
Q  204 ta 205  Q
    ||    
T  36566227 ta 36566228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 42854799 - 42854967
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||||| || |||||||||||||| ||||||||||| ||||||| |||||| ||    
T  42854799 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttctatcaggacatccaaaactaaagtaaaaagataaggacttagggttgaccc 42854898  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagc 172  Q
    ||| |||| || ||||||||  ||||||||   |||  | ||||| ||||||||||||| ||| |||||    
T  42854899 ttggtgcagtcctattgttataggaaaatctacggtatcttcatcctgcgtcctcacactagtcgaagc 42854967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 36544638 - 36544447
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaat 113  Q
    ||||| ||||||||||  ||||| ||||||||||||||  || | ||||||||||||||| ||||||||||| | ||||| |||||| ||||| ||||||    
T  36544638 aaaaagcatacatctcagtgctaactcttggatgtgttgcatcaatacatccaaaactaaagtaaaaagataagaacttagggttgacccttggtgcaat 36544539  T
Q  114 catattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatata 205  Q
    | |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  || || ||||||||||| | ||||||    
T  36544538 cctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatatatatccttgatagccctaatata 36544447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 12492628 - 12492757
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactt-aggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| | |||| || |||| ||    
T  12492628 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataagaacttaagattgaccc 12492727  T
Q  104 ttgatgcaatcatattgttacgggaaaatc 133  Q
    ||| ||||||| |||||||| || ||||||    
T  12492728 ttggtgcaatcctattgttatggaaaaatc 12492757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 41445089 - 41445219
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaa-aagatatggactta-ggttgatc 102  Q
    |||||| | ||||||| | |||||||| |||||||| |||||||||||   ||| ||||||||||| ||| ||||| || ||| || |||| |||| | |    
T  41445089 catcatctacaaaaaatagacatctcggtgctagcttttggatgtgtttcgtaattacatccaaaattaaagtaaacaaaataagggcttagggttaacc 41445188  T
Q  103 cttgatgcaatcatattgttacgggaaaatc 133  Q
    |||| | |||||||||||||| |||||||||    
T  41445189 cttggtacaatcatattgttatgggaaaatc 41445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 3284938 - 3284861
Alignment:
Q  56 taagtacatccaaaactaaggtaaaaagatatggacttag-gttgatccttgatgcaatcatattgttacgggaaaat 132  Q
    |||||||||||||||||||||| |||||||| || ||||| ||||| ||||| ||||||  |||||||| | ||||||    
T  3284938 taagtacatccaaaactaaggtgaaaagataagggcttagtgttgaaccttggtgcaatactattgttatgagaaaat 3284861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 30579021 - 30579092
Alignment:
Q  12 ttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatc-caaaactaaggtaaaaa 82  Q
    |||||||| || |||||||  |||||||||||| ||||||||| ||||||||||  |||||||| |||||||    
T  30579021 ttcaaaaagcaaacatctcagtgctagctcttgtatgtgttctgtaagtacatcaaaaaactaaagtaaaaa 30579092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 11130727 - 11130796
Alignment:
Q  6 atcattttcaaaaaac-atacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaa 74  Q
    |||||||||||||||  |||||||| |||||||| | |||||||| ||  ||||||||||| ||||||||    
T  11130727 atcattttcaaaaaaatatacatcttgatgctagattttggatgtctttcataagtacatcaaaaactaa 11130796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 38667054 - 38666986
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaa 82  Q
    ||||||| |||||| ||  |||||||| ||||||||||| |  |||||||| ||||||||| |||||||    
T  38667054 caaaaaaaatacatttcagtgctagctattggatgtgttttgcaagtacattcaaaactaatgtaaaaa 38666986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 51448495 - 51448696
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||||||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  51448495 catcatctgcaaaaagcatacatctcgatgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 51448594  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||| ||||||||||||||||| |||||  |||  ||||| ||||||||||| | ||||    
T  51448595 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacaccagtcgaagctccctcatacatatccttgatagccctaata 51448694  T
Q  204 ta 205  Q
    ||    
T  51448695 ta 51448696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 52138314 - 52138123
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaat 113  Q
    ||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||    
T  52138314 aaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgatccttggtgcaat 52138215  T
Q  114 catattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatata 205  Q
      |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||||    
T  52138214 tctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatata 52138123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 29817005 - 29816891
Alignment:
Q  1 actgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttg 99  Q
    |||| ||||| |||||||||||||||||||| ||||| |||| ||||||||| | |||||||||||||| ||||||||||||| || || |||| |||||    
T  29817005 actgtatcatcttcaaaaaacatacatctcggtgctaactctaggatgtgttttgtaagtacatccaaacctaaggtaaaaaggtaagggcttagggttg 29816906  T
Q  100 atccttgatgcaatc 114  Q
    | ||||| |||||||    
T  29816905 agccttggtgcaatc 29816891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 9258370 - 9258294
Alignment:
Q  17 aaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactt 93  Q
    ||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  9258370 aaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaagataaggactt 9258294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 48221259 - 48221070
Alignment:
Q  23 tacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatg-gacttaggttgatccttgatgcaatcatattgt 121  Q
    ||||||||||||||| |||||||||||||| |  ||||||||| |||||||| |||||||  ||||   || |||||| | |||| ||||||| ||||||    
T  48221259 tacatctcgatgctaactcttggatgtgttttgcaagtacatctaaaactaaagtaaaaatttatgatcctaaggttggttcttggtgcaatcctattgt 48221160  T
Q  122 tacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatataagtaat 211  Q
    || || ||| |||| ||||  | |||| ||| ||||||||| || |||| || |||  ||||| || |||||||||||| ||||||||||    
T  48221159 tatggaaaattcgtcggtggtcgcatcctgcatcctcacactagctgaatccacctcatacatatctttgatagctcgagtataagtaat 48221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 38849590 - 38849389
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg-ttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||  |||||||| ||||||     ||||||||||||||||   ||||||||| |||||||   |||| ||    
T  38849590 catcatctacaaaaagcatacatctcggtgcttactcttggacgtgttccgcccgtacatccaaaactaaataaaaaagataaggacttacaattgaccc 38849491  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| || ||||| || |||||| |||||  || |||  ||||||||||||| ||| |||||  |||  ||||| ||||||||||||| ||||    
T  38849490 ttggtgcaatcctactgttatggaaaaatctttggtagccccattttgcgtcctcacactagtcgaagctccctcatacatatccttgatagctctaata 38849391  T
Q  204 ta 205  Q
    ||    
T  38849390 ta 38849389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 50630135 - 50630198
Alignment:
Q  33 tgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg 96  Q
    ||||||| |||||||||||||  |||||| |||||||||||| ||||||||||| || ||||||    
T  50630135 tgctagcacttggatgtgttccgtaagtaaatccaaaactaaagtaaaaagataagggcttagg 50630198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 26592236 - 26592302
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaa 81  Q
    |||||||||||||| | |||||| |||||||| ||||||| ||||||||||| ||| ||| ||||||    
T  26592236 aaaaaacatacatcacaatgctaactcttggacgtgttctgtaagtacatcccaaagtaaagtaaaa 26592302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19736666 - 19736614
Alignment:
Q  1 actgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttc 53  Q
    |||||||||| | |||||| ||||||||| | ||||| |||||||||||||||    
T  19736666 actgcatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttc 19736614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19757484 - 19757432
Alignment:
Q  1 actgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttc 53  Q
    |||||||||| | |||||| ||||||||| | ||||| |||||||||||||||    
T  19757484 actgcatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttc 19757432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 25190875 - 25190827
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttc 53  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||    
T  25190875 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 25190827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 11593449 - 11593248
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  11593449 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 11593350  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   |||||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  11593349 ttggtgcaatcctattgttatgggaaaatcttcggtagtctcatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 11593250  T
Q  204 ta 205  Q
    ||    
T  11593249 ta 11593248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 46356637 - 46356838
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  46356637 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 46356736  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| |||||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  46356737 ttggtgcaatcctattgttatgggaaaatctttggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 46356836  T
Q  204 ta 205  Q
    ||    
T  46356837 ta 46356838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 49028777 - 49028576
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||| | ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  49028777 catcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 49028678  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||| | ||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  49028677 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctacgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 49028578  T
Q  204 ta 205  Q
    ||    
T  49028577 ta 49028576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 32630104 - 32629946
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | ||||||||||||||||  ||||||||||| ||||||| |||||| ||    
T  32630104 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgttagtacatccaaaactagagtaaaaagataaggacttagggttgaccc 32630005  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    ||| |||| || |||||||| |||||||||   |||  || |||| |||||||||||||    
T  32630004 ttggtgcagtcctattgttatgggaaaatctacggtatccccatcctgcgtcctcacac 32629946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 33350592 - 33350721
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||| ||| |||||| ||    
T  33350592 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggagttagggttgaccc 33350691  T
Q  104 ttgatgcaatcatattgttacgggaaaatc 133  Q
    ||| ||||||| |||||||| |||||||||    
T  33350692 ttggtgcaatcctattgttatgggaaaatc 33350721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 36651490 - 36651289
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | |||||| |||||||| ||||||||||| ||||||| |||||| ||    
T  36651490 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatctaaaactaaagtaaaaagataaggacttagggttgaccc 36651391  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||| | | |||   | |||| ||||||||||||| ||| ||| |  |||  ||||| ||||||||||| | ||||    
T  36651390 ttggtgcaatcctattgttatgggaaaaacttcggtagtcccatcctgcgtcctcacactagtcgaaactccctcatacatatccttgatagccctaata 36651291  T
Q  204 ta 205  Q
    ||    
T  36651290 ta 36651289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 39907165 - 39907294
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| || |||||||| ||||||| |||||| ||    
T  39907165 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtgaaaagataaggacttagggttgaccc 39907264  T
Q  104 ttgatgcaatcatattgttacgggaaaatc 133  Q
    ||| ||||||| |||||||| |||||||||    
T  39907265 ttggtgcaatcctattgttatgggaaaatc 39907294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 36870075 - 36870164
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta 94  Q
    |||||| | |||||| ||||||||||| |||||||||||||||||||||  | ||||||||||||||||| ||||||||||| |||||||    
T  36870075 catcatctgcaaaaagcatacatctcggtgctagctcttggatgtgttccgtcagtacatccaaaactaaagtaaaaagataaggactta 36870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 38897090 - 38896949
Alignment:
Q  22 atacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatcatattg 120  Q
    |||||||||| ||||| |||||||||||||||  | | ||||||||||||||| | ||||||||| ||||||| |||||| ||||| ||||||| |||||    
T  38897090 atacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagcaaaaagataaggacttagggttgacccttggtgcaatcctattg 38896991  T
Q  121 ttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    ||| ||||||||| | |||   | |||| |||||||||||||    
T  38896990 ttatgggaaaatcttcggtagtcccatcctgcgtcctcacac 38896949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 24426284 - 24426432
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    ||||||| |||||||||||||||| |||||  |||||||  |||||||||||||||| ||  ||||||||||| | ||||| |||||| ||||| |||||    
T  24426284 caaaaaatatacatctcgatgctaactcttaaatgtgttgcataagtacatccaaaattatagtaaaaagataagcacttatggttgacccttggtgcaa 24426383  T
Q  113 tcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcaca 161  Q
    |||| ||||||  | |||||| |  || |||||||| ||| ||||||||    
T  24426384 tcatgttgttatagaaaaatcatcagtaacctcatcttgcatcctcaca 24426432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 43793819 - 43793938
Alignment:
Q  6 atcattttcaaaaaa-catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag-gttgatcc 103  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||| | ||||||||||||| |||||||| |||||||| || ||||| ||| | ||    
T  43793819 atcatttgcaaaaaagcatacatcttggtgctcgctcttggatgtgttttgtaagtacatccaacactaaggtgaaaagataagggcttagtgttcaacc 43793918  T
Q  104 ttgatgcaatcatattgtta 123  Q
    ||| ||||||| ||||||||    
T  43793919 ttggtgcaatcttattgtta 43793938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 38606525 - 38606415
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| ||||||||| | ||||| |||||||||||||||| | ||||||||||||||||| | ||||||||| ||||| | |||||| ||||| ||||     
T  38606525 caaaaagcatacatcttggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagcaaaaagataaggactaagggttgacccttggtgcag 38606426  T
Q  113 tcatattgtta 123  Q
    || ||||||||    
T  38606425 tcctattgtta 38606415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 20499585 - 20499486
Alignment:
Q  25 catctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatcatattgtta 123  Q
    ||||||| |||||||||||||||||||||   |||||||||||||| ||| ||||||||||| || |||| |||| | ||||| ||||||| ||||||||    
T  20499585 catctcggtgctagctcttggatgtgttccgcaagtacatccaaaagtaaagtaaaaagataagggcttatggttcaaccttggtgcaatcctattgtta 20499486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 24177983 - 24178072
Alignment:
Q  7 tcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg 96  Q
    |||||| |||||| ||||||||||| ||||| |||||||  ||||||  | |||||||||||||||||  |||||||||| | |||||||    
T  24177983 tcatttgcaaaaagcatacatctcggtgctaactcttgggcgtgttccgtcagtacatccaaaactaaaataaaaagataagaacttagg 24178072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 48055623 - 48055732
Alignment:
Q  25 catctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatcatattgtta 123  Q
    ||||||| |||||||||||||||||| ||   | |||||||||||| ||| ||||||||||| || |||| |||| | ||||| ||||||| ||||||||    
T  48055623 catctcggtgctagctcttggatgtgctccgcaggtacatccaaaagtaaagtaaaaagataagggcttatggttcagccttggtgcaatcctattgtta 48055722  T
Q  124 cgggaaaatc 133  Q
     || ||||||    
T  48055723 tggaaaaatc 48055732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 21520229 - 21520288
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaa 74  Q
    ||||| ||||||||||| ||||| |||||||||||||||  ||| |||||||||||||||    
T  21520229 aaaaagcatacatctcggtgctaactcttggatgtgttccgtaaatacatccaaaactaa 21520288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 23087901 - 23087970
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaa 74  Q
    |||||| | ||||| |||||||||||  ||||| || ||||||||||| | |||||| ||||||||||||    
T  23087901 catcatctgcaaaatacatacatctcagtgctatctgttggatgtgttttgtaagtatatccaaaactaa 23087970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 31004720 - 31004672
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttc 53  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||    
T  31004720 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 31004672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 23907097 - 23907289
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| ||||||||||| ||||| ||||||| |||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||||| |||||    
T  23907097 caaaaagcatacatctcggtgctaactcttggttgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaa 23907196  T
Q  113 tcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatata 205  Q
    || |||||||| ||||||||| | |||   |||||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||||| ||||||    
T  23907197 tcctattgttatgggaaaatcttcggtagtctcatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagctctaatata 23907289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 39707958 - 39707738
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||||||||||| ||| ||| | |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||| | ||    
T  39707958 catcatctgcaaaaaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatccaaaactaaagtaaaaagataaggacttagggttaaccc 39707859  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||  ||||||| |||||||| ||||||||| ||||| | | |||| ||||||||||| | |||  || |  |||  ||||| ||||||||||||| ||||    
T  39707858 ttagtgcaatcctattgttatgggaaaatctttggt-agcccatcatgcgtcctcacgctagtcaaaactccctcatacatttccttgatagctctaata 39707760  T
Q  204 taagtaatccatactcctttct 225  Q
    || | |||||| || |||||||    
T  39707759 taggcaatccaaacccctttct 39707738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 435719 - 435527
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||||| ||||     
T  435719 caaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcac 435620  T
Q  113 tcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaatata 205  Q
    || |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||||    
T  435619 tcctattgttatgggaaaatcttcggtagtcccatcttgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatata 435527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 1212093 - 1212221
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| ||||| |||||||| | ||||||||||||||||||| || |||||||| ||||||| |||||| ||    
T  1212093 catcatctccaaaaagcatacatctcggtgctaactcttagatgtgttatgtaagtacatccaaaactaaagtgaaaagataaggacttagggttgaacc 1212192  T
Q  104 ttgatgcaatcatattgttacgggaaaat 132  Q
    ||| ||||||| |||||||| ||||||||    
T  1212193 ttggtgcaatcctattgttatgggaaaat 1212221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 1777817 - 1777967
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatcatatt 119  Q
    ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| || |||||||| ||| ||| |||||| ||||| ||||||| ||||    
T  1777817 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagttaaaagataaggatttagggttgacccttggtgcaatcctatt 1777916  T
Q  120 gttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaa 170  Q
    |||| ||||||||| | |||   | |||| | ||||||||||| |||||||    
T  1777917 gttatgggaaaatcttcggtagtcccatcctacgtcctcacactagttgaa 1777967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 53704051 - 53703905
Alignment:
Q  60 tacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctc 158  Q
    ||||||||||||||| ||||||||||| ||||||| |||||| ||||| ||||||| |||||||||||||||||| | |||   | |||| || ||||||    
T  53704051 tacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttacgggaaaatcttcggtagtcccatcctgtgtcctc 53703952  T
Q  159 acaccagttgaagcctcctagtacatgtccttgatagctcgaatata 205  Q
    |||| ||| |||||  |||  ||||| ||||||||||| | ||||||    
T  53703951 acactagtcgaagctccctcatacatatccttgatagccctaatata 53703905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 17666811 - 17666892
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||| |||||||  ||||||||||| |||||| | ||||||||||| | ||||||||||||||||||| |||||||||||    
T  17666811 catcatattcaaaatgcatacatctcggtgctagttgttggatgtgttatgtaagtacatccaaaactaatgtaaaaagata 17666892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 48623313 - 48623442
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| ||||||||||||||   | | ||||||||||||||| ||||||||||| | ||||| |||||| ||    
T  48623313 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttacgtcaatacatccaaaactaaagtaaaaagataagaacttagggttgaacc 48623412  T
Q  104 ttgatgcaatcatattgttacgggaaaatc 133  Q
    ||| ||||||| ||||| || | |||||||    
T  48623413 ttggtgcaatcctattgataagagaaaatc 48623442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 27450968 - 27451088
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| ||||||||||| || || ||||||||||||||   | ||||||||||||||||| ||||||||| | ||||||| |||||| ||||| ||||     
T  27450968 caaaaagcatacatctcggtgttaactcttggatgtgtttcgttagtacatccaaaactaaagtaaaaagagaaggacttagggttgacccttggtgcag 27451067  T
Q  113 tcatattgttacgggaaaatc 133  Q
    |  |||||||| |||||||||    
T  27451068 ttctattgttatgggaaaatc 27451088  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 42037395 - 42037327
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaa 82  Q
    ||||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||||||||| ||||    
T  42037395 caaaaaaaatacatctcggtgctcgctcttggatgtgttttctaagtacatccaaaactaaggtgaaaa 42037327  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 3272916 - 3272815
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| |||||||||| |||||| | ||| |||  ||||||||| || |||||||||||| ||||||| |||  |||||| |||||||||||| |||||    
T  3272916 caaaaagcatacatctcaatgctaacgcttagattcgttctataaatagatccaaaactaatgtaaaaatataaagacttagggttgatccttggtgcaa 3272817  T
Q  113 tc 114  Q
    ||    
T  3272816 tc 3272815  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 16002401 - 16002350
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatc 65  Q
    |||||||||||||||||| ||||| |||||||||||||||  ||||||||||    
T  16002401 caaaaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatc 16002350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 10776238 - 10776336
Alignment:
Q  38 gctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag-gttgatccttgatgcaatcatattgttacgggaaaatcgt 135  Q
    ||||||| ||||||||  |||||||||||||||||||  | |||||||| || ||| | ||||| ||||| ||||||| |||||| | |||||||||||    
T  10776238 gctcttgaatgtgttccgtaagtacatccaaaactaaaatgaaaagataagggcttggtgttgaaccttggtgcaatcctattgtcatgggaaaatcgt 10776336  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 55769198 - 55769244
Alignment:
Q  40 tcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||    
T  55769198 tcttggatgtgttccataaatacatccaaaactaaagtaaaaagata 55769244  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 17668109 - 17668190
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||| ||||||| |||||||||| | |||||| | |||||||||||   |||||||| ||||||| || |||||||||||    
T  17668109 catcatcttcaaaacacatacatcttggtgctagttgttggatgtgtttcgtaagtacacccaaaacaaatgtaaaaagata 17668190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 21060260 - 21060188
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    ||||| |||||||| | || | || |||||||||||||| | ||||||||||||||||||| |||||| ||||    
T  21060260 caaaatacatacatttggaagttatctcttggatgtgttatgtaagtacatccaaaactaaagtaaaaggata 21060188  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 20917471 - 20917413
Alignment:
Q  36 tagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta 94  Q
    ||||| |||||||||||| |||| || |||||||| || | ||||||||||||||||||    
T  20917471 tagcttttggatgtgttccataaataaatccaaaattaggataaaaagatatggactta 20917413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 55833454 - 55833500
Alignment:
Q  40 tcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||||||||||| ||||  |||||||||||||| |||||||||||    
T  55833454 tcttggatgtgttccataaacacatccaaaactaaagtaaaaagata 55833500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 15183542 - 15183461
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag 95  Q
    ||||||||||| || | | |||| |||||||||||| || | ||| ||||||||||||||| || |||||||| || |||||    
T  15183542 caaaaaacatatatattggtgctcgctcttggatgtattatgtaaatacatccaaaactaaagtgaaaagataagggcttag 15183461  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 53707290 - 53707241
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttct 54  Q
    |||||| | |||||| ||||||||||| ||||| ||||||||||||||||    
T  53707290 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttct 53707241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 56374786 - 56374737
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttct 54  Q
    |||||| | |||||| ||||||||||| ||||| ||||||||||||||||    
T  56374786 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttct 56374737  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 24584392 - 24584586
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||||||||||||||| || || |||||||||||||||  | ||||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  24584392 catcatctgcaaaaaacatacatctcggtgataactcttggatgtgttccgttagtacatccaaaactaaagtaaaaagataaggacttagggttgaccc 24584491  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctc 198  Q
    ||| ||||||| |||||||| ||||||||| | |||  || |||| |||||| |||||  ||| |||||  |||  ||||| |||||||||||||    
T  24584492 ttggtgcaatcctattgttatgggaaaatcttcggtagccccatcctgcgtcttcacagtagtcgaagctccctcatacatatccttgatagctc 24584586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 2610024 - 2609803
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  2610024 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 2609925  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| |||||   | |||| ||||||||||||| | | |||||   ||  ||||| ||||||||||| | ||||    
T  2609924 ttggtgcaatcctattgttatgggaaaatctttggtagtcccatcctgcgtcctcacactaatcgaagctctctcatacatatccttgatagccctaata 2609825  T
Q  204 taagtaatccatactcctttct 225  Q
    || | ||||| ||| |||||||    
T  2609824 taggcaatccttacccctttct 2609803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 452412 - 452560
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaat 113  Q
    ||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||||| ||||||    
T  452412 aaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaat 452511  T
Q  114 catattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    | |||||||| ||||||||| | |||   |||||| |||||||||||||    
T  452512 cctattgttatgggaaaatcttcggtagtctcatcctgcgtcctcacac 452560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 38453404 - 38453562
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | ||||| |||||||||||| ||||| |||||||||||||| | | | ||||||||||||||| ||||| ||||  ||||||| |||||| ||    
T  38453404 catcatctgcaaaatacatacatctcggtgctaactcttggatgtgttttgtcaatacatccaaaactaaagtaaagagatgaggacttagggttgaccc 38453503  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    ||| ||||||| |||||||| ||||||||| | ||| | | |||| |||||||||||||    
T  38453504 ttggtgcaatcctattgttatgggaaaatcttcggtaatcccatcctgcgtcctcacac 38453562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 45368411 - 45368612
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| |||||  ||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  45368411 catcatctgcaaaaagcatacatctcggtgctaattcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 45368510  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| |||| || |||||||| |||||||||   |||  || |||| ||| ||||||||| ||| |||||  |||  ||||| |||| |||||||| ||||    
T  45368511 ttggtgcagtcctattgttatgggaaaatctacggtatccccatcctgcatcctcacactagtcgaagctccctcatacatatcctggatagctctaata 45368610  T
Q  204 ta 205  Q
    ||    
T  45368611 ta 45368612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 8180291 - 8180099
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| ||||||||||||||   | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  8180291 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgtttcgtcaatacatccaaaactaaagtaaaaagataaggacttatggttgaccc 8180192  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagc 196  Q
    |||  |||||| |||||||| ||||||||| | |||     |||| |||| |||||||| ||| |||||  ||| |||||| |||||||||||    
T  8180191 ttggcgcaatcctattgttatgggaaaatcttcggtagttccatcctgcgacctcacactagtcgaagctccctcgtacatatccttgatagc 8180099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 876634 - 876521
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag-gttgatccttgatgcaatcatatt 119  Q
    ||||||||| | |||| ||||||||||||||||  |||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||||| | ||    
T  876634 catacatcttggtgctcgctcttggatgtgttccgtaagtacatccaaaacgaaggtgaaaagataagggcttagtgttgaaccttggtgcaatcctgtt 876535  T
Q  120 gttacgggaaaatc 133  Q
    |||| |||||||||    
T  876534 gttatgggaaaatc 876521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 16292175 - 16292081
Alignment:
Q  39 ctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatcatattgttacgggaaaat 132  Q
    |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||||||    
T  16292175 ctcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttgatgcaatcctaatgttatgggaaaat 16292081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13148822 - 13148741
Alignment:
Q  1 actgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaa 82  Q
    |||||||||| | |||||  |||||||||   |||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  13148822 actgcatcatctacaaaatgcatacatcttagtgctagctcttggatgtgttctgtaagtacatccaaaactaaagtaaaaa 13148741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 12475207 - 12475296
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta 94  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||| | |||||||    
T  12475207 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagaaaaggactta 12475296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 14769785 - 14769676
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata-tggactta-ggttgatccttgatgcaa 112  Q
    ||||||||||||| | | |||||||||||| ||||||  | ||||||||||||||| ||| |||||||||||  || |||| |||||| ||||| |||||    
T  14769785 aaaaaacatacatattggtgctagctcttgaatgtgtgatgtaagtacatccaaaattaaagtaaaaagatacagggcttagggttgacccttggtgcaa 14769686  T
Q  113 tcatattgtt 122  Q
    ||||||||||    
T  14769685 tcatattgtt 14769676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 13593172 - 13593223
Alignment:
Q  35 ctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||| || |||||||| ||||||||||||||||||||| |||||||||||    
T  13593172 ctagctattagatgtgttttataagtacatccaaaactaatgtaaaaagata 13593223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 7135457 - 7135533
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaa 81  Q
    |||||||| |||||  |||||||||| ||| |||||||||| ||||||   ||||||||||||||| ||| ||||||    
T  7135457 catcatttgcaaaatgcatacatctcaatggtagctcttggttgtgtttggtaagtacatccaaaattaaagtaaaa 7135533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 33595091 - 33595126
Alignment:
Q  42 ttggatgtgttctataagtacatccaaaactaaggt 77  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33595091 ttggatgtgttttataagtacatccaaaactaaggt 33595126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 34502106 - 34502164
Alignment:
Q  12 ttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaa 70  Q
    |||||||||||||||||| | |||||||||||| |||||||   || ||||||||||||    
T  34502106 ttcaaaaaacatacatcttggtgctagctcttgcatgtgtttcgtaggtacatccaaaa 34502164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 7789347 - 7789411
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaa 79  Q
    ||||| ||||||||||||||| ||||||||| ||| || | || |||||| ||||||||| ||||    
T  7789347 aaaaatcatacatctcgatgccagctcttggttgtattttctaggtacattcaaaactaaagtaa 7789411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 6082896 - 6082695
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| | ||||| |||||| ||    
T  6082896 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataagaacttagggttgaccc 6082797  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||||| ||||||| | |||   |||||| ||||||||||||| ||| |||||  |||  ||||| |||||||||| || ||||    
T  6082796 ttggtgcaatcctattgttacgagaaaatcttcggtagtctcatcttgcgtcctcacactagtcgaagctccctcatacatatccttgatagttctaata 6082697  T
Q  204 ta 205  Q
    ||    
T  6082696 ta 6082695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 9706261 - 9706103
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactt-aggttgatccttgatgcaat 113  Q
    ||||| |||||| |||| ||||| ||||||||||||||   | ||||||||||||||||| ||||||||||| |||||| ||||||| ||||| |||| |    
T  9706261 aaaaagcatacaactcggtgctaactcttggatgtgtttcgtcagtacatccaaaactaaagtaaaaagataaggacttaaggttgacccttggtgcagt 9706162  T
Q  114 catattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagc 172  Q
    |||||||||| |||||||||   |||  ||||||| ||||||||||||| ||| |||||    
T  9706161 catattgttatgggaaaatctacggtatcctcatcctgcgtcctcacactagtcgaagc 9706103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 30670384 - 30670226
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| |||||||||| |||||| ||||||||||| |||  | |||||| |||||||||| ||||||||| | ||| ||| |||||| ||    
T  30670384 catcatctgcaaaaagcatacatctcaatgctaactcttggatgtattccgtcagtacacccaaaactaaagtaaaaagacaaggatttatggttgaccc 30670285  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    ||| ||||||| |||||||| ||||||||| | ||| |||||||| ||| |||||||||    
T  30670284 ttggtgcaatcttattgttatgggaaaatcttaggtaacctcatcatgcatcctcacac 30670226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 2208206 - 2208323
Alignment:
Q  23 tacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg-ttgatccttgatgcaatcatattgt 121  Q
    ||||||| | ||||| |||||||||||||||  ||||||||||||||||||| |||||||| || || |||||| |||| ||||| |||||||||||||     
T  2208206 tacatcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttggtgcaatcatattga 2208305  T
Q  122 tacgggaaaatcgttggt 139  Q
    || || ||||||||||||    
T  2208306 tatggaaaaatcgttggt 2208323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 3629691 - 3629568
Alignment:
Q  40 tcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactt-aggttgatccttgatgcaatcatattgttacgggaaaatcgttgg 138  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| || ||| ||||||| ||||  ||||||| |||||||| ||||||||||| ||    
T  3629691 tcttgaatgtgttccataagtacatccaaaactaaagtaaaaagataagggcttaaggttgacccttagtgcaatcctattgttatgggaaaatcgtcgg 3629592  T
Q  139 tgacctcatcgtgcgtcctcacac 162  Q
    | |||  ||| ||||| |||||||    
T  3629591 taaccctatcttgcgttctcacac 3629568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 5258936 - 5259063
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggt-aaaaagatatggactta-ggttgatc 102  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | ||||||||||||||||| || ||||||||| ||||||| |||| | |    
T  5258936 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaaaagataaggacttagggtttacc 5259035  T
Q  103 cttgatgcaatcatattgttacgggaaa 130  Q
    |||| ||||||| |||||||| ||||||    
T  5259036 cttggtgcaatcctattgttatgggaaa 5259063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 5631304 - 5631224
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta 94  Q
    |||||||||| ||||||| ||||| |||||||||||||||  | ||||||||||||||||| ||||||||||| |||||||    
T  5631304 caaaaaacatgcatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaaagataaggactta 5631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 20428423 - 20428551
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||| ||||||||  |||||||||||||| |||| |||| ||||||   ||||| |||||| ||    
T  20428423 catcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtacatccaaagctaaagtaataagataaaaacttagggttgaccc 20428522  T
Q  104 ttgatgcaatcatattgttacgggaaaat 132  Q
    ||| |||| || |||||||| ||||||||    
T  20428523 ttggtgcagtcctattgttatgggaaaat 20428551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 2680853 - 2680926
Alignment:
Q  22 atacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggt-aaaaagatatggactta 94  Q
    |||||||||||||||| | |||||||||||| | ||||||||||||||||||| || ||||||||| |||||||    
T  2680853 atacatctcgatgctaacacttggatgtgttatgtaagtacatccaaaactaaagtaaaaaagataaggactta 2680926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 9369197 - 9369274
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggact 92  Q
    ||||||||||||||| | |||| ||| |||||||||||   |||||||||||||||||||||| |||||||| |||||    
T  9369197 aaaaaacatacatcttggtgctcgcttttggatgtgtttcgtaagtacatccaaaactaaggtgaaaagataaggact 9369274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 33495703 - 33495629
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaa 79  Q
    |||||| | |||||| |||||||||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||    
T  33495703 catcatatgcaaaaagcatacatctcgatgctaaatcttggatgtgttccgtcagtacattcaaaactaaagtaa 33495629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 27790641 - 27790521
Alignment:
Q  16 aaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaatc 114  Q
    |||| ||||||||| ||||||| || |||||||||||  |||||| ||| ||||||||| |||||||| || ||  ||| |||||| ||||| |  ||||    
T  27790641 aaaagcatacatcttgatgctaacttttggatgtgtttcataagtgcattcaaaactaaagtaaaaaggtaagggtttagggttgacccttggtataatc 27790542  T
Q  115 atattgttacgggaaaatcgt 135  Q
     | |||||| |||||||||||    
T  27790541 cttttgttatgggaaaatcgt 27790521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 2076260 - 2076452
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  2076260 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 2076359  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagc 196  Q
    ||| ||||||| |||||||  ||||||||| | |||   |||||| ||||||||||||| ||| |||||  |||  ||||| |||||||||||    
T  2076360 ttggtgcaatcctattgttgtgggaaaatcttcggtagtctcatcatgcgtcctcacactagtcgaagctccctcatacatatccttgatagc 2076452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 1288375 - 1288576
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||| ||| ||||||| |||||| ||    
T  1288375 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaatataaggacttagggttgaccc 1288474  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  1288475 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 1288574  T
Q  204 ta 205  Q
    ||    
T  1288575 ta 1288576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 1274761 - 1274560
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  1274761 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 1274662  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||  |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| || |||||||| | ||||    
T  1274661 ttggtgcaattctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatctttgatagccctaata 1274562  T
Q  204 ta 205  Q
    ||    
T  1274561 ta 1274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 24178020 - 24177819
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||| ||||||| ||||||||||  ||||||| |||||| ||    
T  24178020 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcccaaactaaagtaaaaagattaggacttagggttgaccc 24177921  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| ||||||| ||||||||  |||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||||| ||||    
T  24177920 ttggtgcaatcctattgttatcggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagctctaata 24177821  T
Q  204 ta 205  Q
    ||    
T  24177820 ta 24177819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3394211 - 3394078
Alignment:
Q  1 actgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttg 99  Q
    |||||||||| | |||||| ||||||||||| ||||| |||||||||||||||  | ||||||||||||||||  ||||| ||||| ||||||| ||||     
T  3394211 actgcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactagagtaaagagataaggacttagggttt 3394112  T
Q  100 atccttgatgcaatcatattgttacgggaaaatc 133  Q
    | ||||| ||||||| |||||||| |||||||||    
T  3394111 acccttggtgcaatcctattgttatgggaaaatc 3394078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 20318487 - 20318295
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||| |||||||   | | ||||||||||||||| ||||||||||| ||||||| |||||| ||    
T  20318487 catcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgtttcgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgaccc 20318388  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagc 196  Q
    ||| ||||||| |||||||| ||||||||| | |||   | |||| ||||||||||||| ||| ||| |  |||  ||||| |||||||||||    
T  20318387 ttggtgcaatcctattgttatgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaaactccctcatacatatccttgatagc 20318295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 27417 - 27296
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttaggttgatccttgatgcaat 113  Q
    |||||||||||||||||| ||||| ||||||||| || ||   ||||||||||||||| ||  ||||||| || |  |||||||||||||||  ||||||    
T  27417 caaaaaacatacatctcgttgctaactcttggatatggtccgcaagtacatccaaaacaaaaataaaaaggtaagagcttaggttgatccttcgtgcaat 27318  T
Q  114 catattgttacgggaaaatcgt 135  Q
    | ||||||||||||||||||||    
T  27317 cctattgttacgggaaaatcgt 27296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 12493148 - 12493276
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatcc 103  Q
    |||||| | |||||| ||||||||| | ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||| ||| |||||| ||    
T  12493148 catcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggagttagggttgaccc 12493247  T
Q  104 ttgatgcaatcatattgttacgggaaaat 132  Q
    ||| ||||||| |||||||| ||||||||    
T  12493248 ttggtgcaatcctattgttatgggaaaat 12493276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 3301347 - 3301254
Alignment:
Q  3 tgcatcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg 96  Q
    |||||||| | |||||| ||||||||||| ||||| |||||||||||||||| | ||||||||||||||||  ||||| ||||| |||||||||    
T  3301347 tgcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactagagtaaagagataaggacttagg 3301254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 10638794 - 10638703
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg 96  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| |||||||||    
T  10638794 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagg 10638703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 28977643 - 28977724
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| |||||||||||    
T  28977643 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagata 28977724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 40383941 - 40383794
Alignment:
Q  16 aaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagat-atggacttaggttgatccttgatgcaatc 114  Q
    |||| ||||||||||  |||||||||||| || |||| | ||||||||||||| ||||| |||||||||| ||||  | | ||||||| ||| ||| |||    
T  40383941 aaaagcatacatctcagtgctagctcttgaatatgttatgtaagtacatccaagactaaagtaaaaagataatggtttaatgttgatcattggtgcgatc 40383842  T
Q  115 atattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacac 162  Q
    ||| |||||  | |||||||| |||| ||  ||| ||| |||||||||    
T  40383841 ataatgttattgaaaaatcgtcggtggccctatcttgcttcctcacac 40383794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 14099811 - 14099757
Alignment:
Q  16 aaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaa 70  Q
    |||||||||||||||| |||||||||||| |||||||  ||||||| ||||||||    
T  14099811 aaaaacatacatctcggtgctagctcttgcatgtgtttcataagtatatccaaaa 14099757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 31502868 - 31502962
Alignment:
Q  40 tcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag-gttgatccttgatgcaatcatattgttacgggaaaatc 133  Q
    |||||||| |||| | ||||||||||||||| |||||| |||||||| |||| ||| ||||| ||||| | ||||| |||||||| ||| |||||    
T  31502868 tcttggatttgttttgtaagtacatccaaaattaaggtgaaaagataaggacgtagtgttgaaccttggtacaatcctattgttaaggggaaatc 31502962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 37124056 - 37123946
Alignment:
Q  14 caaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggactta-ggttgatccttgatgcaa 112  Q
    |||||| ||||  ||||||| |||||| ||| |||| |||||||| ||||||||||||||| |||| |||||| || |||| | ||||| |||| || ||    
T  37124056 caaaaagcatatgtctcgatactagctattgaatgtattctataaatacatccaaaactaaagtaagaagataagggcttatgattgattcttggtgtaa 37123957  T
Q  113 tcatattgtta 123  Q
    || ||||||||    
T  37123956 tcttattgtta 37123946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 43558608 - 43558670
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaag 83  Q
    |||| |||||| || ||||||||||||||||||  ||||||||||||||||||| || |||||    
T  43558608 catatatctcggtgttagctcttggatgtgttccgtaagtacatccaaaactaaagtgaaaag 43558670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 35685340 - 35685270
Alignment:
Q  15 aaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    ||||||||||||||| | ||||| |||||| |||||||| |||| ||| ||||||||||| | |||||||||    
T  35685340 aaaaaacatacatcttggtgctacctcttgaatgtgttccataaatac-tccaaaactaaagcaaaaagata 35685270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 3096674 - 3096625
Alignment:
Q  21 catacatctcgatgctagctcttggatgtgttctataagtacatccaaaa 70  Q
    ||||||||| | |||| ||| ||||||||||||| |||||||||||||||    
T  3096674 catacatcttggtgctcgcttttggatgtgttctgtaagtacatccaaaa 3096625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 16134841 - 16134881
Alignment:
Q  24 acatctcgatgctagctcttggatgtgttctataagtacat 64  Q
    |||||| ||||||  ||||||||||||||||||||||||||    
T  16134841 acatcttgatgctcactcttggatgtgttctataagtacat 16134881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 30964 - 30763
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg-ttgatcc 103  Q
    |||||| | |||||| ||||||||||| ||||| |||||||||||||||  | | ||||||||||||||| ||||||||||| ||||||||| |||| ||    
T  30964 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttaggattgaccc 30865  T
Q  104 ttgatgcaatcatattgttacgggaaaatcgttggtgacctcatcgtgcgtcctcacaccagttgaagcctcctagtacatgtccttgatagctcgaata 203  Q
    ||| |||| || |||||||  ||||||||| | |||   | |||| ||||||||||||| ||| |||||  |||  ||||| ||||||||||| | ||||    
T  30864 ttggtgcagtcctattgttttgggaaaatcttcggtagtcccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaata 30765  T
Q  204 ta 205  Q
    ||    
T  30764 ta 30763  T

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Target: scaffold0286 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 305 - 422
Alignment:
Q  23 tacatctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg-ttgatccttgatgcaatcatattgt 121  Q
    ||||||| | ||||| |||||||||||||||  ||||||||||||||||||| |||||||| || || |||||| |||| ||||| |||||||||||||     
T  305 tacatcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttggtgcaatcatattga 404  T
Q  122 tacgggaaaatcgttggt 139  Q
    || || ||||||||||||    
T  405 tatggaaaaatcgttggt 422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 88760 - 88855
Alignment:
Q  45 gatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttagg-ttgatccttgatgcaatcatattgttacgggaaaatcgttggt 139  Q
    |||||||||  | ||||||||||||| ||| |||||||| || ||||||||| |||| ||||| ||||||| ||| |||||||||||||| |||||    
T  88760 gatgtgttcctttagtacatccaaaagtaatgtaaaaagttaaggacttagggttgacccttggtgcaatcctatggttacgggaaaatctttggt 88855  T

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Target: scaffold0606 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 9131 - 9028
Alignment:
Q  38 gctcttggatgtgttctataagtacatccaaaactaaggtaaaaagatatggacttag-gttgatccttgatgcaatcatattgttacgggaaaatcgtt 136  Q
    ||||||||||||||| | |||||||||||||||||||  | ||||||||  |  |||| ||||  ||||| ||||||| |||||||| |||||||||||     
T  9131 gctcttggatgtgttttgtaagtacatccaaaactaaaatgaaaagataatggtttagtgttgtaccttggtgcaatcctattgttatgggaaaatcgtc 9032  T
Q  137 ggtg 140  Q
    ||||    
T  9031 ggtg 9028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 25020 - 25080
Alignment:
Q  26 atctcgatgctagctcttggatgtgttctataagtacatccaaaactaaggtaaaaagata 86  Q
    |||||| ||||| ||||| ||||||||| ||||| |||| ||||||||| |||||||||||    
T  25020 atctcggtgctaactcttagatgtgttccataagaacattcaaaactaaagtaaaaagata 25080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 12378 - 12442
Alignment:
Q  5 catcattttcaaaaaacatacatctcgatgctagctcttggatgtgttctataagtacatccaaa 69  Q
    |||||| |||||||| ||||||||||| ||||| |||||| ||||||||| | | ||||||||||    
T  12378 catcatcttcaaaaagcatacatctcggtgctaactcttgaatgtgttctgtcaatacatccaaa 12442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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