View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_562 (Length: 229)
Name: NF10954A_low_562
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_562 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 22768201 - 22767973
Alignment:
| Q |
1 |
tcaagtgcagcaaattaccgaaggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaagctaatgggattaagtgctttactcattgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22768201 |
tcaagtgcagcaaattaccgaaggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaagctaatgggattaagtgctttactcattgct |
22768102 |
T |
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| Q |
101 |
ggtaatgacgtaatagctagcattgctggctcccgaaaaggaaggaggaaccgaacaattacctcgcaacccggtgacccaaagaagtagtttgcatata |
200 |
Q |
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| T |
22768101 |
ggtaatgacgtaatagctagcattgctggctcccgaaaaggaaggaggaaccgaacaattacctcgcaacccggtgacccaaagaagtagtttgcatata |
22768002 |
T |
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| Q |
201 |
gggatgcttgttatccagttctgacttga |
229 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
22768001 |
gggatgcgtgttatccagttctgacttga |
22767973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 21597922 - 21597806
Alignment:
| Q |
22 |
aggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaagctaatgggattaagtgctttactcattgctggtaatgacgtaatagctagc |
121 |
Q |
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| T |
21597922 |
aggagatgaaaataggttgttatatttgacaaaaaacctcgggttgaagctaatgggtttgagtgctttactcattgctggtaatgatgtaatagctagc |
21597823 |
T |
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| Q |
122 |
attgctggctcccgaaa |
138 |
Q |
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| T |
21597822 |
gttgctgcctcccgaaa |
21597806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 21624078 - 21623959
Alignment:
| Q |
22 |
aggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaagctaatgggattaagtgctttactcattgctggtaatgacgtaatagctagc |
121 |
Q |
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| T |
21624078 |
aggagatgaaaataggttgttatatttgacaaaaaaccttgggttgaagctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctagc |
21623979 |
T |
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| Q |
122 |
attgctggctcccgaaaagg |
141 |
Q |
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| T |
21623978 |
gttgctgcctcccgaaaagg |
21623959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 21645809 - 21645589
Alignment:
| Q |
6 |
tgcagcaaattaccgaaggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaagctaatgggattaagtgctttactcattgctggtaa |
105 |
Q |
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||||| ||||||| | ||||||||||| | |||||||||||||||| ||||||| || |||||||||||||| || || |||||||||||||| ||||| |
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| T |
21645809 |
tgcaggaaattactggaggagatgaaaccatgttgtcatatttgacaaaaaacctcgggttgaagctaatgggtttgagcgctttactcattgccggtaa |
21645710 |
T |
|
| Q |
106 |
tgacgtaatagctagcattgctggctcccgaaaaggaag---gaggaaccgaacaattacctcgcaacccggtgacccaaagaag---tagtttgcatat |
199 |
Q |
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||| |||||||||||| |||||| |||||||||||| || |||||||||| |||| ||| | | ||||||||| |||||||||||| |
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| T |
21645709 |
tgatgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaatt---------ccccataatccaaagaagaaatagtttgcatat |
21645619 |
T |
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| Q |
200 |
agggatgcttgttatccagttctgacttga |
229 |
Q |
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| T |
21645618 |
aggggtgcttgttatccagttctgacttga |
21645589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 21597762 - 21597715
Alignment:
| Q |
182 |
aagaagtagtttgcatatagggatgcttgttatccagttctgacttga |
229 |
Q |
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| T |
21597762 |
aagaaatagtttgcatatgggggtgcttgttatctagttctgacttga |
21597715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 21623912 - 21623876
Alignment:
| Q |
191 |
tttgcatatagggatgcttgttatccagttctgactt |
227 |
Q |
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||||||||| ||| ||||||||||||||||||||||| |
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| T |
21623912 |
tttgcatatgggggtgcttgttatccagttctgactt |
21623876 |
T |
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