View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_565 (Length: 229)
Name: NF10954A_low_565
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_565 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 13879697 - 13879885
Alignment:
| Q |
30 |
cagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
129 |
Q |
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| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
13879796 |
T |
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| Q |
130 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacagagtgagattttctt |
220 |
Q |
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| T |
13879797 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgac--agtgagattttctt |
13879885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 13875477 - 13875640
Alignment:
| Q |
33 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
132 |
Q |
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| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
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| Q |
133 |
ggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
196 |
Q |
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| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
160 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
196 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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