View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_567 (Length: 229)
Name: NF10954A_low_567
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_567 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 16544319 - 16544464
Alignment:
| Q |
48 |
cttctttgaaattgtagagagaggtgagggagatcggtttagagagagggtaaaggggaagaaatgaaatcttaaaccagaatattccttttatactcac |
147 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16544319 |
cttctttgaaattgtagagagaggtgagagagattggtttagagagaggataaaagagaagaaatgaaatcttaaatcagaatattccttttatactcac |
16544418 |
T |
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| Q |
148 |
tctcgatcccacgcgcgtgcatccaccgttatctcatgctccctca |
193 |
Q |
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| T |
16544419 |
tctcgatcccacgcgtgtgcatcctccgttatctcatgctccctca |
16544464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 16621343 - 16621198
Alignment:
| Q |
48 |
cttctttgaaattgtagagagaggtgagggagatcggtttagagagagggtaaaggggaagaaatgaaatcttaaaccagaatattccttttatactcac |
147 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16621343 |
cttctttgaaattgtagagagaggtgagagagattggtttagagagaggataaaagagaagaaatgaaatcttaaatcagaatattccttttatactcac |
16621244 |
T |
|
| Q |
148 |
tctcgatcccacgcgcgtgcatccaccgttatctcatgctccctca |
193 |
Q |
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| T |
16621243 |
tctcgatcccacgcgtgtgcatcctccgttatctcatgctccctca |
16621198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16544277 - 16544305
Alignment:
| Q |
1 |
aagatgaagattgttcttcatgttcttca |
29 |
Q |
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| T |
16544277 |
aagatgaagattgttcttcatgttcttca |
16544305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16621385 - 16621357
Alignment:
| Q |
1 |
aagatgaagattgttcttcatgttcttca |
29 |
Q |
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| T |
16621385 |
aagatgaagattgttcttcatgttcttca |
16621357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 20500990 - 20501135
Alignment:
| Q |
48 |
cttctttgaaattgtagagagaggtgagggagatcggtttagagagagggtaaaggggaagaaatgaaatcttaaaccagaatattccttttatactcac |
147 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| |||| | || ||||||||||||| || ||||||||||||||||||||||| |
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| T |
20500990 |
cttctttgaaattgtagagagaggtgagagagattggtttagagagaggataaaagagacgaaatgaaatctttaatcagaatattccttttatactcac |
20501089 |
T |
|
| Q |
148 |
tctcgatcccacgcgcgtgcatccaccgttatctcatgctccctca |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20501090 |
tctcgatcccacgcgcgtgcatccaccgttatctcatgctccctca |
20501135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 31356204 - 31356077
Alignment:
| Q |
62 |
tagagagaggtgagggagatcggtttagagagagggtaaaggggaagaaatgaaatcttaaaccagaatattccttttatactcactctcgatcccacgc |
161 |
Q |
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|||||||| ||||| ||| | |||||||||||||| |||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31356204 |
tagagagaagtgagagagtttggtttagagagaggataaaagagaagaaatgagatcacaaaccagaatattccttttatactcactctcgatcccacgc |
31356105 |
T |
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| Q |
162 |
gcgtgcatccaccgttatctcatgctcc |
189 |
Q |
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| T |
31356104 |
gcgtgcatccaccgttatctcatgctcc |
31356077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 29185202 - 29185143
Alignment:
| Q |
48 |
cttctttgaaattgtagagagaggtgagggagatcggtttagagagagggtaaaggggaa |
107 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||| |
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| T |
29185202 |
cttctttgaaattgtagagagaggtaagagagatcggtttagagagaggataaaagggaa |
29185143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29185249 - 29185221
Alignment:
| Q |
1 |
aagatgaagattgttcttcatgttcttca |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29185249 |
aagatgaagattgttcttcatgttcttca |
29185221 |
T |
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