View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_57 (Length: 409)

Name: NF10954A_low_57
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_57
NF10954A_low_57
[»] chr1 (1 HSPs)
chr1 (20-409)||(36314413-36314805)
[»] chr8 (28 HSPs)
chr8 (68-409)||(19345132-19345458)
chr8 (68-400)||(19503885-19504202)
chr8 (94-409)||(19390546-19390864)
chr8 (65-409)||(19410743-19411072)
chr8 (65-409)||(19457762-19458091)
chr8 (65-409)||(19522987-19523316)
chr8 (68-409)||(19592093-19592416)
chr8 (65-409)||(19469355-19469681)
chr8 (65-409)||(19540279-19540605)
chr8 (243-398)||(19337427-19337582)
chr8 (243-400)||(19355445-19355602)
chr8 (274-409)||(19468610-19468745)
chr8 (274-409)||(19555531-19555666)
chr8 (68-180)||(19337681-19337793)
chr8 (68-167)||(19355714-19355813)
chr8 (68-191)||(19468410-19468533)
chr8 (68-191)||(19555331-19555454)
chr8 (86-191)||(19404923-19405028)
chr8 (88-185)||(19376801-19376898)
chr8 (261-403)||(19172821-19172963)
chr8 (256-409)||(19376580-19376733)
chr8 (261-403)||(19287683-19287825)
chr8 (274-398)||(19404722-19404846)
chr8 (286-398)||(19370934-19371046)
chr8 (94-176)||(19172660-19172742)
chr8 (81-179)||(19287901-19287999)
chr8 (286-398)||(19341154-19341266)
chr8 (110-157)||(19371145-19371192)
[»] chr6 (2 HSPs)
chr6 (95-191)||(19543241-19543337)
chr6 (261-409)||(19543029-19543177)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 36314413 - 36314805
Alignment:
Q  20 aaccataaattacattccattcatatgatgatgcattgtccattttgctt---ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  36314413 aaccataaattacattccattcatatgatgatgcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 36314512  T
Q  117 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccactt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36314513 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccactt 36314612  T
Q  217 gttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtact 316  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314613 gttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtact 36314712  T
Q  317 gatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36314713 gatacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttcccgcgttttttga 36314805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 68 - 409
Target Start/End: Complemental strand, 19345458 - 19345132
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19345458 ttggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19345359  T
Q  168 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 267  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | || ||||||| ||| | |||||||  ||||||||||||||||    
T  19345358 catatctgcattcccaatatctcca------------tcatgacc---tactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatcttta 19345274  T
Q  268 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 367  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||| | |||||||||||||| ||||||||||| |    
T  19345273 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaactttcgtgggaatgttctcgaatattccattgctat 19345174  T
Q  368 taagttttccacttttccaatacactttgccgcgttttttga 409  Q
    |||||||||| |||||||||||| || |||||| ||| ||||    
T  19345173 taagttttccgcttttccaatacgctatgccgcttttcttga 19345132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 68 - 400
Target Start/End: Original strand, 19503885 - 19504202
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19503885 ttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19503984  T
Q  168 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 267  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | |||||||||| ||| | |||||||  ||||||||||||||||    
T  19503985 catatctgcattcccaatctctcca------------tcatgacc---tactaacctccccttcgaggttagttgccatcgtgcaaacttcccatcttta 19504069  T
Q  268 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 367  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||  | |||||||||||||| |||||||||||||    
T  19504070 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaacttttgtgggaatgttctcgaatattccattgcttt 19504169  T
Q  368 taagttttccacttttccaatacactttgccgc 400  Q
    |||||||||| |||||||||| |||||||||||    
T  19504170 taagttttccgcttttccaatgcactttgccgc 19504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 94 - 409
Target Start/End: Complemental strand, 19390864 - 19390546
Alignment:
Q  94 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 193  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  194 tagcattgtct---tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttc 290  Q
    ||  | | |||   |||||| ||||| ||||| | ||||||||||  |    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttc 19390665  T
Q  291 attcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatac 390  Q
    || ||||||||| ||||||||||| ||||| ||| ||||||||||||  |||||||||||||| |  |||||||||||||||||||| ||||||||||||    
T  19390664 atccttgttagagacaataatgtattgatatatacgttgaacattcaccggaatgttctcgaataaaccattgcttttaagttttccgcttttccaatac 19390565  T
Q  391 actttgccgcgttttttga 409  Q
    |||||||||||||| ||||    
T  19390564 actttgccgcgtttcttga 19390546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 65 - 409
Target Start/End: Complemental strand, 19411072 - 19410743
Alignment:
Q  65 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 164  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19411072 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19410973  T
Q  165 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 264  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19410972 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19410888  T
Q  265 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 364  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19410887 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19410788  T
Q  365 ttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19410787 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19410743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 65 - 409
Target Start/End: Complemental strand, 19458091 - 19457762
Alignment:
Q  65 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 164  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  165 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 264  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19457991 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19457907  T
Q  265 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 364  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19457906 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19457807  T
Q  365 ttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19457806 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19457762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 65 - 409
Target Start/End: Original strand, 19522987 - 19523316
Alignment:
Q  65 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 164  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  165 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 264  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19523087 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19523171  T
Q  265 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 364  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19523172 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19523271  T
Q  365 ttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19523272 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19523316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 68 - 409
Target Start/End: Complemental strand, 19592416 - 19592093
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| |||||    
T  19592416 ttggtgttcccgcctttttctgaaaaacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgtaaca 19592320  T
Q  168 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 267  Q
     |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  ||||||||||||||||    
T  19592319 catatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatcttta 19592235  T
Q  268 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 367  Q
    ||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | |||||||||||    
T  19592234 acttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttt 19592135  T
Q  368 taagttttccacttttccaatacactttgccgcgttttttga 409  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  19592134 taagttttccgcttttccaatacactttgccgcttttcttga 19592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 65 - 409
Target Start/End: Original strand, 19469355 - 19469681
Alignment:
Q  65 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 164  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19469355 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19469451  T
Q  165 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 264  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19469452 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19469536  T
Q  265 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 364  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19469537 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19469636  T
Q  365 ttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19469637 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 65 - 409
Target Start/End: Original strand, 19540279 - 19540605
Alignment:
Q  65 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 164  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19540279 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19540375  T
Q  165 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 264  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19540376 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19540460  T
Q  265 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 364  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19540461 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19540560  T
Q  365 ttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19540561 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19540605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 19337582 - 19337427
Alignment:
Q  243 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 342  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||| ||||||| |||   |||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcagga 19337483  T
Q  343 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgcc 398  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19337482 atgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgcc 19337427  T

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Target: chr8; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 19355602 - 19355445
Alignment:
Q  243 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 342  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||||| |||| |||  |||||| |||  ||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctgga 19355503  T
Q  343 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgc 400  Q
    ||||||||||| |||||||| ||| |||||||||| |||||||||| |||||||||||    
T  19355502 atgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccgc 19355445  T

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Target: chr8; HSP #12
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 274 - 409
Target Start/End: Original strand, 19468610 - 19468745
Alignment:
Q  274 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 373  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19468610 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19468709  T
Q  374 ttccacttttccaatacactttgccgcgttttttga 409  Q
    |||| |||||||||||||||||||||| ||| ||||    
T  19468710 ttccgcttttccaatacactttgccgcttttcttga 19468745  T

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Target: chr8; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 274 - 409
Target Start/End: Original strand, 19555531 - 19555666
Alignment:
Q  274 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 373  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19555531 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19555630  T
Q  374 ttccacttttccaatacactttgccgcgttttttga 409  Q
    |||| |||||||||||||||||||||| ||| ||||    
T  19555631 ttccgcttttccaatacactttgccgcttttcttga 19555666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 19337793 - 19337681
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19337793 ttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19337694  T
Q  168 tatatctgcattt 180  Q
     || |||||||||    
T  19337693 catgtctgcattt 19337681  T

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Target: chr8; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 19355813 - 19355714
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19355813 ttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19355714  T

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Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  168 tatatctgcatttccaatttctcc 191  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

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Target: chr8; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 19555331 - 19555454
Alignment:
Q  68 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 167  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19555331 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19555430  T
Q  168 tatatctgcatttccaatttctcc 191  Q
     |||||||||||| |||| |||||    
T  19555431 catatctgcatttacaatatctcc 19555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 19405028 - 19404923
Alignment:
Q  86 tctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 185  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19405028 tctgaaacacctcaccaggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaat 19404929  T
Q  186 ttctcc 191  Q
     |||||    
T  19404928 atctcc 19404923  T

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Target: chr8; HSP #19
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 19376898 - 19376801
Alignment:
Q  88 tgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 185  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  19376898 tgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacatatatctgcatttccaat 19376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 403
Target Start/End: Original strand, 19172821 - 19172963
Alignment:
Q  261 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 360  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| ||||||||| |||| | ||||||||| ||| | ||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  361 ttgcttttaagttttccacttttccaatacactttgccgcgtt 403  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccgcgtt 19172963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 409
Target Start/End: Complemental strand, 19376733 - 19376580
Alignment:
Q  256 ttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaaca 355  Q
    |||| |||||||| |||||||   || |||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||    ||||| |||||||| |    
T  19376733 ttccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaata 19376634  T
Q  356 ttccattgcttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19376633 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttga 19376580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 403
Target Start/End: Complemental strand, 19287825 - 19287683
Alignment:
Q  261 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 360  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| | ||||||| |||| ||||||||||||||| |  |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  361 ttgcttttaagttttccacttttccaatacactttgccgcgtt 403  Q
    |||| | || ||||||| |||||||||||||||||||||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccgcgtt 19287683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 19404846 - 19404722
Alignment:
Q  274 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 373  Q
    |||| |||||||||||||| ||||||||| |||||| |||| |||||||||  |||||||||    ||||| |||||||| | ||||| |||||||||||    
T  19404846 aaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatccatcgcttttaagtt 19404747  T
Q  374 ttccacttttccaatacactttgcc 398  Q
    |||| ||||||||||||||||||||    
T  19404746 ttccgcttttccaatacactttgcc 19404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 398
Target Start/End: Complemental strand, 19371046 - 19370934
Alignment:
Q  286 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 385  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  ||||||||||||||| | |||||||||| ||||||||||||||||||    
T  19371046 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttcc 19370947  T
Q  386 aatacactttgcc 398  Q
    ||| |||||||||    
T  19370946 aatgcactttgcc 19370934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  94 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 176  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  81 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 179  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 398
Target Start/End: Complemental strand, 19341266 - 19341154
Alignment:
Q  286 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 385  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  | ||||||||||||| | ||||||||||  |||||||||||||||||    
T  19341266 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttcc 19341167  T
Q  386 aatacactttgcc 398  Q
    ||| |||||||||    
T  19341166 aatgcactttgcc 19341154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  110 tacaagttggtatatcctcccatttttggcaccctccattgctattat 157  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  95 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 191  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 409
Target Start/End: Complemental strand, 19543177 - 19543029
Alignment:
Q  261 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 360  Q
    |||||||| || |||||  || ||||||||||  || ||||||||||||||||| | ||||| | |||||||||||   || |||||| |||| |  |||    
T  19543177 atctttaattttaaaagtaaaggaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataaccca 19543078  T
Q  361 ttgcttttaagttttccacttttccaatacactttgccgcgttttttga 409  Q
    || ||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  19543077 tttcttctaagttttccgcttttccaatacactttgccgcttttcttga 19543029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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