View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_58 (Length: 407)
Name: NF10954A_low_58
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_58 |
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| [»] scaffold0008 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 38 - 394
Target Start/End: Original strand, 14444170 - 14444532
Alignment:
| Q |
38 |
tgacaaaaacatggccaaaggtgcacaagaagaccacaaactgagaagcaatgcacgtggaataacgactaacttctagagtaacttgatcattgatgca |
137 |
Q |
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| T |
14444170 |
tgacaaaaacatggccaaaggtgcacaagaagaccacaaactgagaagcaatacatatggaataacaactaatttctaaagtaacttgatcattgatgca |
14444269 |
T |
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| Q |
138 |
aaacactaaaagacgataataacaactagcttcttgcttactcacttaaacaaagctctataaatataa------ttcaaatgtgaaagacaactttctt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14444270 |
aaacactaaaagacgataataacaactagcttcttgcttgctcacttaaacaaagctctataaatataaacataattcaaatgtgaaagacaactttctt |
14444369 |
T |
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| Q |
232 |
atacaatctctcatcaaaacacttctcttaaagaattgtcatatgtaaataaattagaagcagaaagttcaaatttcttgaaaaagatcaatcaccttta |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14444370 |
atacaatctctcatcaaaacacttctcttaaagaattgtcatatgtaaataaattataagcagaaagttcaaatttcttgaaaaagatcaatcaccttca |
14444469 |
T |
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| Q |
332 |
aacttgagattcattctcaaacattatatagcaatcacaagtatactcaagcctacattatat |
394 |
Q |
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| T |
14444470 |
aacttgagattcattctcaaacattatatagcaatcacaagtatactcaaacctacattatat |
14444532 |
T |
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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 264482 - 264411
Alignment:
| Q |
321 |
aatcacctttaaacttgagattcattctcaaacattatatagcaatcacaagtatactcaagcctacattat |
392 |
Q |
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| T |
264482 |
aatcatctttaagcttgagattcattctcaatcattatataacaataacaaatacactcaagcctccattat |
264411 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 20590248 - 20590303
Alignment:
| Q |
331 |
aaacttgagattcattctcaaacattatatagcaatcacaagtatactcaagccta |
386 |
Q |
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| T |
20590248 |
aaacttgagattcattctcaaacattagatagcaatcacaaatacactcatgccta |
20590303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 5486476 - 5486538
Alignment:
| Q |
321 |
aatcacctttaaacttgagattcattctcaaacattatatagcaatcacaagtatactcaagc |
383 |
Q |
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| T |
5486476 |
aatcatcttttaacttgagattcattctcaaacattagatagtaaacacaaatacactcaagc |
5486538 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 19411496 - 19411442
Alignment:
| Q |
308 |
cttgaaaaagatca--atcacctttaaacttgagattcattctcaaacattatat |
360 |
Q |
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| T |
19411496 |
cttgaaaaagatcagaaacatcttcaaacttgagattcattctcaaacattatat |
19411442 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 26330832 - 26330755
Alignment:
| Q |
287 |
agaagcagaaagttcaaatttcttgaaaaagatca--atcacctttaaacttgagattcattctcaaacattatatag |
362 |
Q |
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| T |
26330832 |
agaagcagaaaatcaagattacttgaaaaatatcagaatcatcttcaaacttgagattcattctcaaacattagatag |
26330755 |
T |
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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 395
Target Start/End: Complemental strand, 168941 - 168877
Alignment:
| Q |
332 |
aacttgagattca-ttctcaaacattatatagcaatcacaagtatactcaagcctacattatatt |
395 |
Q |
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| T |
168941 |
aacttaagattcacttctcaaacattagatagaaatcacaaatacactcaaacctccattatatt |
168877 |
T |
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