View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_581 (Length: 229)

Name: NF10954A_low_581
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_581
NF10954A_low_581
[»] chr5 (2 HSPs)
chr5 (1-229)||(42435316-42435536)
chr5 (185-229)||(11417026-11417070)
[»] chr4 (1 HSPs)
chr4 (1-152)||(28293411-28293563)
[»] chr2 (3 HSPs)
chr2 (185-228)||(5543048-5543091)
chr2 (185-229)||(3594227-3594271)
chr2 (185-225)||(33731713-33731753)
[»] chr6 (1 HSPs)
chr6 (185-229)||(1950234-1950278)
[»] chr1 (2 HSPs)
chr1 (190-228)||(14318937-14318975)
chr1 (187-228)||(41759550-41759591)
[»] chr8 (2 HSPs)
chr8 (200-229)||(5274855-5274884)
chr8 (185-229)||(45121705-45121749)
[»] chr7 (1 HSPs)
chr7 (191-228)||(45433312-45433349)
[»] chr3 (1 HSPs)
chr3 (185-229)||(39935004-39935048)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 42435316 - 42435536
Alignment:
Q  1 aaaatatttcttgatttgaataaatttttgaaatactcgtatttatttttctggaagtcttgtataaaacatttcaggattttgttacagatttcaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  42435316 aaaatatttcttgatttgaataaatttttgaaatactcgtatttatatttctggaagtcttgtataaaacatttcaggatttt-ttacaaatttcaaaaa 42435414  T
Q  101 acaccttgaaatcttaacatttgtaagca-gggctaataacactagtggaaaatgttgatttgcaacttgcaagtgtgaaataacaggatccataaatct 199  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||       ||||||||||||| ||| ||||||||| |||||    
T  42435415 acaccttgaaatcttaacatttgtaagtaggggccaataacactagtggaaaatgttgat-------ttgcaagtgtgaagtaagaggatccat-aatct 42435506  T
Q  200 attgccttaagattttgagtaagagtgtga 229  Q
    ||| ||||||| |||||| | |||||||||    
T  42435507 attaccttaaggttttgaatcagagtgtga 42435536  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 11417070 - 11417026
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtga 229  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||||    
T  11417070 aggatccataaacccattgccttaaggttttgtgtaagagtgtga 11417026  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 28293563 - 28293411
Alignment:
Q  1 aaaatatttcttgatttgaataaatttttgaaatactcgtatttatttttctggaagtcttgtataaaacatttcaggattttgttacagatttcaaaaa 100  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||||| ||| || ||| |  ||||||||| |||||||||||| ||||| ||||||||||    
T  28293563 aaaatgtttctcgatttgaataaattttttaaatactcgtatttatatttatgaaagacccgtataaaacgtttcaggatttttttacaaatttcaaaaa 28293464  T
Q  101 acaccttgaaatcttaacatttgtaagca-gggctaataacactagtggaaaa 152  Q
    ||||   |||||| ||||||||||||||| |||| ||||||||||||||||||    
T  28293463 acacaacgaaatcctaacatttgtaagcaggggccaataacactagtggaaaa 28293411  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 5543091 - 5543048
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtg 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||    
T  5543091 aggatccataaacctattgccttaagattttgggtaagagtgtg 5543048  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 3594271 - 3594227
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtga 229  Q
    ||||||||||||   ||||| ||||||||||||||||||||||||    
T  3594271 aggatccataaacacattgctttaagattttgagtaagagtgtga 3594227  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 33731713 - 33731753
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagt 225  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  33731713 aggatccataaacctattgccttaaggttttgggtaagagt 33731753  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 1950278 - 1950234
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtga 229  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||    
T  1950278 aggagccataaatctaatgccttaaggttttgagtaagagtgtga 1950234  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 14318937 - 14318975
Alignment:
Q  190 ccataaatctattgccttaagattttgagtaagagtgtg 228  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  14318937 ccataaatctattgccttaaggttttgggtaagagtgtg 14318975  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 41759550 - 41759591
Alignment:
Q  187 gatccataaatctattgccttaagattttgagtaagagtgtg 228  Q
    |||||||||||| ||||||||||| ||||| |||||||||||    
T  41759550 gatccataaatccattgccttaaggttttgggtaagagtgtg 41759591  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 5274855 - 5274884
Alignment:
Q  200 attgccttaagattttgagtaagagtgtga 229  Q
    ||||||||||||||||||||||||||||||    
T  5274855 attgccttaagattttgagtaagagtgtga 5274884  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 45121749 - 45121705
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtga 229  Q
    |||||||||||| |||  |||||||| ||||||||||||||||||    
T  45121749 aggatccataaacctacagccttaaggttttgagtaagagtgtga 45121705  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 45433312 - 45433349
Alignment:
Q  191 cataaatctattgccttaagattttgagtaagagtgtg 228  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  45433312 cataaacctattgccttaagattttgggtaagagtgtg 45433349  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 39935048 - 39935004
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtga 229  Q
    |||||||||||| | ||||||||||  ||||||||||||||||||    
T  39935048 aggatccataaacccattgccttaaagttttgagtaagagtgtga 39935004  T

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