View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_592 (Length: 228)

Name: NF10954A_low_592
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_592
NF10954A_low_592
[»] chr2 (3 HSPs)
chr2 (1-227)||(26632404-26632631)
chr2 (31-65)||(15605304-15605338)
chr2 (20-65)||(627416-627461)
[»] chr5 (4 HSPs)
chr5 (12-64)||(23223857-23223909)
chr5 (19-65)||(12124815-12124861)
chr5 (12-64)||(12124616-12124668)
chr5 (30-64)||(34397228-34397262)
[»] chr4 (4 HSPs)
chr4 (12-64)||(5244637-5244689)
chr4 (11-64)||(11444839-11444892)
chr4 (11-64)||(11548233-11548286)
chr4 (17-64)||(2604133-2604180)
[»] chr8 (5 HSPs)
chr8 (17-64)||(38201923-38201970)
chr8 (16-66)||(33435343-33435393)
chr8 (26-64)||(41395717-41395755)
chr8 (20-65)||(36110558-36110603)
chr8 (31-64)||(36203462-36203495)
[»] chr7 (1 HSPs)
chr7 (17-66)||(33342935-33342984)
[»] chr3 (2 HSPs)
chr3 (31-64)||(25258198-25258231)
chr3 (30-64)||(7231204-7231238)
[»] chr1 (2 HSPs)
chr1 (26-64)||(9450329-9450367)
chr1 (12-64)||(5759967-5760019)
[»] scaffold0471 (1 HSPs)
scaffold0471 (20-65)||(426-471)
[»] chr6 (1 HSPs)
chr6 (12-64)||(9993020-9993072)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26632404 - 26632631
Alignment:
Q  1 tcattcccttgactgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttttataattatttgattttgaagacctaaaggtgttgt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26632404 tcattcctttgactgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttttataattatttgattttgaagacctaaaggtgttgt 26632503  T
Q  101 cgtggcaatgggtattccataggttgaagattcccannnnnnngtattatgaatggtgttggaatcctagactatgtttgttgacgtag-tttttgggtc 199  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  26632504 cgtggcaatgggtattccataggttgaagattcccatttatttgtattatgaatggtgttggaatcctagactatgtttgttgaggtagttttttgggtc 26632603  T
Q  200 agctgttgtggcgttggtgctgattcgg 227  Q
    ||||||||||||||||||||||||||||    
T  26632604 agctgttgtggcgttggtgctgattcgg 26632631  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 15605338 - 15605304
Alignment:
Q  31 aatgaacaatttcataagtgagaagagtaattttt 65  Q
    ||||||||||||||||||||||||| |||||||||    
T  15605338 aatgaacaatttcataagtgagaagggtaattttt 15605304  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 627416 - 627461
Alignment:
Q  20 tgatacaagggaatgaacaatttcataagtgagaagagtaattttt 65  Q
    ||||| |||| ||| |||||||| ||||||||||||||||||||||    
T  627416 tgataaaaggaaattaacaattttataagtgagaagagtaattttt 627461  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 23223909 - 23223857
Alignment:
Q  12 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  23223909 actgtcgctgatataagggaatgagcaatttcataagtgagaagagtattttt 23223857  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 12124815 - 12124861
Alignment:
Q  19 ctgatacaagggaatgaacaatttcataagtgagaagagtaattttt 65  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||    
T  12124815 ctgatataaaggaatgaacaatttcacaagtgagaagagtaattttt 12124861  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 12124668 - 12124616
Alignment:
Q  12 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    ||||| ||||||| ||||||||||  |||||||||||| ||||||||||||||    
T  12124668 actgctgctgatataagggaatgagaaatttcataagttagaagagtaatttt 12124616  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 34397228 - 34397262
Alignment:
Q  30 gaatgaacaatttcataagtgagaagagtaatttt 64  Q
    ||||||||||||||||| |||||||||||||||||    
T  34397228 gaatgaacaatttcatatgtgagaagagtaatttt 34397262  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 5244637 - 5244689
Alignment:
Q  12 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||| |||||| ||||||||||| ||||||| |||||||||||||||||||    
T  5244637 actgcctctgatataagggaatgaataatttcacaagtgagaagagtaatttt 5244689  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 11444892 - 11444839
Alignment:
Q  11 gactgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||||||| ||| ||||||||||  |||||||||||||||| ||||||||||    
T  11444892 gactgccgctaatataagggaatgaggaatttcataagtgagatgagtaatttt 11444839  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 11548233 - 11548286
Alignment:
Q  11 gactgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||||||||||| ||||||||||  |||||||||| ||||| ||||||||||    
T  11548233 gactgccgctgatataagggaatgaggaatttcataactgagatgagtaatttt 11548286  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 2604133 - 2604180
Alignment:
Q  17 cgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||||| |||||||||| |||||||||||||||||| |||| ||||    
T  2604133 cgctgatataagggaatgagcaatttcataagtgagaaaagtattttt 2604180  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 38201970 - 38201923
Alignment:
Q  17 cgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  38201970 cgctaatataagggaatgaacaatttcataagtgaaaagagtaatttt 38201923  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 33435393 - 33435343
Alignment:
Q  16 ccgctgatacaagggaatgaacaatttcataagtgagaagagtaattttta 66  Q
    ||||| ||| ||| |||| ||||||||||||||||||||||||||||||||    
T  33435393 ccgctaatataagagaataaacaatttcataagtgagaagagtaattttta 33435343  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 41395717 - 41395755
Alignment:
Q  26 aagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  41395717 aagggaatgaagaatttcataagtgagaagagcaatttt 41395755  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36110603 - 36110558
Alignment:
Q  20 tgatacaagggaatgaacaatttcataagtgagaagagtaattttt 65  Q
    ||||| |||||||||| ||||||||||  |||||||||||||||||    
T  36110603 tgatataagggaatgagcaatttcatagatgagaagagtaattttt 36110558  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 36203462 - 36203495
Alignment:
Q  31 aatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||||||||||||||||||||||| |||||||    
T  36203462 aatgaacaatttcataagtgagaagaataatttt 36203495  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 33342935 - 33342984
Alignment:
Q  17 cgctgatacaagggaatgaacaatttcataagtgagaagagtaattttta 66  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||||||||||    
T  33342935 cgctgatataagagaatgagcaattccataagtgagaagagtaattttta 33342984  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 25258198 - 25258231
Alignment:
Q  31 aatgaacaatttcataagtgagaagagtaatttt 64  Q
    ||||||||||||||||||||||||||||||||||    
T  25258198 aatgaacaatttcataagtgagaagagtaatttt 25258231  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 7231204 - 7231238
Alignment:
Q  30 gaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||||||||||||||||| ||||||||||||||    
T  7231204 gaatgaacaatttcataagtaagaagagtaatttt 7231238  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 9450329 - 9450367
Alignment:
Q  26 aagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  9450329 aagggaatgagcaatttcataagtgagaagagcaatttt 9450367  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 5760019 - 5759967
Alignment:
Q  12 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    ||||||| ||||| |||  |||||  |||||||||||||||||||||||||||    
T  5760019 actgccgttgatataagataatgagtaatttcataagtgagaagagtaatttt 5759967  T

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Target: scaffold0471 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 471 - 426
Alignment:
Q  20 tgatacaagggaatgaacaatttcataagtgagaagagtaattttt 65  Q
    ||||| |||||||||| ||||||||||  |||||||||||||||||    
T  471 tgatataagggaatgagcaatttcatagatgagaagagtaattttt 426  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 9993072 - 9993020
Alignment:
Q  12 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 64  Q
    ||||||| || || |||||||||| | ||| ||||||||||||||||||||||    
T  9993072 actgccgttggtataagggaatgagccattccataagtgagaagagtaatttt 9993020  T

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