View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_593 (Length: 228)
Name: NF10954A_low_593
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_593 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 37427683 - 37427852
Alignment:
| Q |
46 |
agacaacataaaatagaaaggaagaaaagcccttttccgaagaaatcaaatgtgaggcaataaccaatacataatatctttagtttgattcaacaactca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37427683 |
agacaacataaaatagaaaggaagaaaagcccttttccgaagaaatcaaatgtgaggcaataaccaatacataatatctttagtttgtttcaacaactca |
37427782 |
T |
|
| Q |
146 |
cttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccagatgtccatc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37427783 |
cttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatc |
37427852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 1664706 - 1664661
Alignment:
| Q |
140 |
aactcacttccttcaagatattagaaaagagatgcttttgcaaata |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1664706 |
aactcacttccttcaagatattagaaaagagatgtttttgtaaata |
1664661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University