View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_599 (Length: 228)
Name: NF10954A_low_599
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_599 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 8186932 - 8187128
Alignment:
| Q |
34 |
caaaagaacaatcttttccactcaactcaagattcgtgtaaaccagataaaagataaaagatttaagggtataaacacagtaagtgtaaatctgcttcac |
133 |
Q |
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| T |
8186932 |
caaaagaacaatcttttccactcaactcaagattcgtgtaaaacagataaaagataaaagatttaagggtataaacacagtaagtgtaaatctgcttcac |
8187031 |
T |
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| Q |
134 |
acctatatttaatgaatgtttactgttctgtt--atcaccttacgttttttaattgtattttagagttgattatacgacacccatattactactatt |
228 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8187032 |
acctatatttaatgaatgtttactgttctgttacatgaccttacgttttttaattgtattttagagttgattatacgacacccatattactactatt |
8187128 |
T |
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