View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_60 (Length: 404)
Name: NF10954A_low_60
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 423113 - 422719
Alignment:
| Q |
1 |
gggaagaagattaagaagaaagaaagggaagacaaattgggttcctttcttgcaaatgttgacgattctaagaattggttagtttcatatatctatatta |
100 |
Q |
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| T |
423113 |
gggaagaagattaagaagaaagaaagggaagacaaattgggttcctttcttgcaaatgttgatgattctaagaattggttagtttcatatatctatatta |
423014 |
T |
|
| Q |
101 |
acttgt---ctctatttccattttcattattgcattccttttgtactcactgacacatacaggctaaggtacatacaagtgtgtcttctataacttttga |
197 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
423013 |
acttgttgtctctatttccattttcattattgcattccttttgtactcactgacacatacaagctaaggtacatacaagtgtgtcttctataacttttga |
422914 |
T |
|
| Q |
198 |
agtctaaagtttgatttagaatgctctgtatctctttctctccaagtgtgtagattgtgaataggatgcatatatttgcaatacatttgtctttttagac |
297 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |
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| T |
422913 |
agtctaaagttttatttagaatgctttgtatctctttctctccaagtgtgtagattgttaataggatgcatatatttgtaatacattggtctttttagac |
422814 |
T |
|
| Q |
298 |
ggtatatagattttgagagcatttgttggtgtcaag-nnnnnnnnnggtcgctaagaggatttacttacaacctttgatggatgatactgtatct |
391 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
422813 |
ggtatatagattttgagagcatttgttggtgtcaagttttttttttggtcgctaagaggatttacatacaacctttgatggatgatactctatct |
422719 |
T |
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