View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_600 (Length: 228)

Name: NF10954A_low_600
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_600
NF10954A_low_600
[»] chr4 (2 HSPs)
chr4 (26-209)||(9336036-9336219)
chr4 (135-202)||(30775099-30775166)
[»] chr7 (19 HSPs)
chr7 (13-208)||(8667260-8667455)
chr7 (27-209)||(8654290-8654472)
chr7 (13-209)||(10494506-10494702)
chr7 (25-209)||(13333600-13333784)
chr7 (27-205)||(8659207-8659385)
chr7 (33-201)||(1301308-1301476)
chr7 (25-199)||(17260091-17260265)
chr7 (25-199)||(17267789-17267963)
chr7 (37-205)||(6789356-6789524)
chr7 (37-169)||(8646757-8646889)
chr7 (37-200)||(3147113-3147276)
chr7 (22-78)||(8545604-8545660)
chr7 (25-203)||(27831019-27831197)
chr7 (25-78)||(8570282-8570335)
chr7 (42-90)||(7877894-7877942)
chr7 (31-78)||(8576297-8576344)
chr7 (138-185)||(8609781-8609828)
chr7 (141-207)||(8585966-8586032)
chr7 (148-184)||(8102532-8102568)
[»] chr2 (7 HSPs)
chr2 (37-205)||(16657673-16657841)
chr2 (25-172)||(7542103-7542250)
chr2 (31-173)||(11999283-11999425)
chr2 (40-205)||(43625256-43625421)
chr2 (30-205)||(14703252-14703427)
chr2 (31-173)||(12245556-12245698)
chr2 (30-173)||(12234565-12234708)
[»] chr1 (2 HSPs)
chr1 (26-203)||(4678703-4678879)
chr1 (37-205)||(15594878-15595046)
[»] chr5 (1 HSPs)
chr5 (37-205)||(28219762-28219930)
[»] chr8 (1 HSPs)
chr8 (39-125)||(43744740-43744826)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 9336036 - 9336219
Alignment:
Q  26 gaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336036 gaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattt 9336135  T
Q  126 atgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336136 atgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatatt 9336219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 30775166 - 30775099
Alignment:
Q  135 gacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtat 202  Q
    ||||||||||||||||||||||||| ||| ||||||||| | || |||||| |||| |||||||||||    
T  30775166 gacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtat 30775099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 8667455 - 8667260
Alignment:
Q  13 tggacatccgtcggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggt 112  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8667455 tggacatcagtcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttgaggt 8667356  T
Q  113 agatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatat 208  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8667355 agatgctttatttacgggaatcgacttttgttcatcaattactcgtgctaaatttgaggaacttaacatggactttttcaatgagtgtatgaatat 8667260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 8654472 - 8654290
Alignment:
Q  27 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattta 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  8654472 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttattta 8654373  T
Q  127 tgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatatt 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  8654372 tgggaatcgacttttcttcatcaatcactcgtgctaaatttgaggaaattaatatggactttttcaatgagtgtatcaatatt 8654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 10494506 - 10494702
Alignment:
Q  13 tggacatccgtcggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggt 112  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||    
T  10494506 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 10494605  T
Q  113 agatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatatt 209  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||  |||||||||||||||    
T  10494606 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatatt 10494702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 13333600 - 13333784
Alignment:
Q  25 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||| ||||||||||| ||||||||||||||    
T  13333600 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttcttttgtcaccactgttgaagtagatgctttatt 13333699  T
Q  125 tatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||  |||||||||||||||    
T  13333700 tatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatatt 13333784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 8659385 - 8659207
Alignment:
Q  27 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| ||| ||||||||     
T  8659385 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtcgattctttatttc 8659286  T
Q  127 tgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
     |||||| ||||| | ||||| ||||||||||||||  ||||||||| | || |||||  |||| ||||||||||||||    
T  8659285 agggaatagacttctgttcattaatcactcgtgccaggtttgaggaaatgaatatggatctttttaatgagtgtatgaa 8659207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 1301476 - 1301308
Alignment:
Q  33 aaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaa 132  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||| || ||||| |||||||| ||| ||||||||  |||||    
T  1301476 aaatccttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctcttttgctttagtcaccaccgttgaggtcgattctttatttcagggaa 1301377  T
Q  133 tcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgta 201  Q
    ||||||| | ||||| ||||||||||||||| ||||||||| |||| |||||  |||| ||||||||||    
T  1301376 tcgacttctgttcattaatcactcgtgccaagtttgaggaaattaatatggatctttttaatgagtgta 1301308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 17260265 - 17260091
Alignment:
Q  25 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatt 124  Q
    ||||||||||| |||||||||||||||||||||| ||||| |  |||||||||| ||| |||||||| | ||| |||| |||||||||||| ||||||||    
T  17260265 ggaacccaaaagccttaaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttcttttgcctctgtgaccaatgttgaggtagacgctttatt 17260166  T
Q  125 tatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtg 199  Q
    || |||  |  | |||||||| ||||||||||||||||| ||||| ||| | || |||||| ||||  |||||||    
T  17260165 taagggtgttaatttttcttcgtcaatcactcgtgccaagtttgaagaaatcaatatggaccttttttatgagtg 17260091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 17267963 - 17267789
Alignment:
Q  25 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatt 124  Q
    ||||||||||| || | ||||||||||||||||| ||||| |  |||||||||| ||| ||||| || | ||| |||| |||||||||||| ||||||||    
T  17267963 ggaacccaaaagccatgaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttcgcctctgtgaccaatgttgaggtagacgctttatt 17267864  T
Q  125 tatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtg 199  Q
    || |||  | || |||||||| ||||||||||||||||| ||||||||| | || |||||| ||||  |||||||    
T  17267863 taagggtgttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtg 17267789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 6789524 - 6789356
Alignment:
Q  37 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcga 136  Q
    ||||||| |||||||||||||| ||||| ||||| |||||| |||| ||||||| | | || || ||| ||||||||||  ||||||||  ||| |||||    
T  6789524 ccttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattgaggtagactctttatttcagggcatcga 6789425  T
Q  137 cttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
    |||   ||||||| | ||||| ||||| ||||||||| | || |||||  |||| ||||||||||||||    
T  6789424 cttcatttcatcacttactcgggccaagtttgaggaaatcaatatggatatttttaatgagtgtatgaa 6789356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 8646889 - 8646757
Alignment:
Q  37 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcga 136  Q
    ||||||||||||||||||| || || ||||| |||||||||| ||| |||||||||| |   |||||  ||||  ||||| |||||||||  || || ||    
T  8646889 ccttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgcttcttgcaccaccattgaattagattctttatttaatggcattga 8646790  T
Q  137 cttttcttcatcaatcactcgtgccaaatttga 169  Q
    ||||  |||||||||||||||||||||||||||    
T  8646789 ctttatttcatcaatcactcgtgccaaatttga 8646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 3147276 - 3147113
Alignment:
Q  37 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcga 136  Q
    ||||||||||||||| ||| || ||||| || |||||| | ||||| ||||||||| |  | |||||  ||||| ||||| ||||||||  |||| | ||    
T  3147276 ccttaaggaggttgaaaacggcgtgtgaaagagcaaaacgaatactatcttttgctgtcatcaccaccattgagatagattctttatttcagggatttga 3147177  T
Q  137 cttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgt 200  Q
    ||| | ||||||||||||||||||||| ||||||||| | || |||||  |||||| |||||||    
T  3147176 cttattttcatcaatcactcgtgccaagtttgaggaaatcaatatggatcttttcactgagtgt 3147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 8545660 - 8545604
Alignment:
Q  22 gtcggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 78  Q
    ||||||||||| || |||| ||||||||||||||||||||||||| |||||||||||    
T  8545660 gtcggaacccagaagccttgaggaggttgagaactgcctgtgagaaggcaaaaagga 8545604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 27831019 - 27831197
Alignment:
Q  25 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatt 124  Q
    ||||||||| | |||| |||||| |||||||    ||||||| ||||||||||| ||| |||||| || |||  || ||| ||||| ||||||| |||||    
T  27831019 ggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatt 27831118  T
Q  125 tatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatg 203  Q
    |  ||| || ||||| | ||||   ||||||||||| || ||||||||| | || |||||| |||||||||| ||||||    
T  27831119 tgagggcattgacttcttttcaatgatcactcgtgcaaagtttgaggaaatcaatatggaccttttcaatgaatgtatg 27831197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 8570335 - 8570282
Alignment:
Q  25 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 78  Q
    ||||||||||| |||| |||||||| ||||| || |||||||||||||||||||    
T  8570335 ggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaagga 8570282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 7877894 - 7877942
Alignment:
Q  42 aggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttg 90  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  7877894 aggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttg 7877942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 8576344 - 8576297
Alignment:
Q  31 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 78  Q
    ||||| |||||||||||||||||||||| ||||| | |||||||||||    
T  8576344 caaaagccttaaggaggttgagaactgcttgtgaaaaggcaaaaagga 8576297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 8609828 - 8609781
Alignment:
Q  138 ttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggac 185  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||||    
T  8609828 ttttgttcatcaatcactcgtgcgaagtttgagcaacttaacatggac 8609781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 8585966 - 8586032
Alignment:
Q  141 tcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaata 207  Q
    |||||||||||||| |||| ||| ||||||||| | || |||||| |||| ||||||||||| ||||    
T  8585966 tcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataaata 8586032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 8102568 - 8102532
Alignment:
Q  148 caatcactcgtgccaaatttgaggaacttaacatgga 184  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  8102568 caatcacccgtgccagatttgaggaacttaacatgga 8102532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 16657673 - 16657841
Alignment:
Q  37 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcga 136  Q
    |||| ||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| ||||||||  |||||| ||    
T  16657673 ccttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctttatttcagggaattga 16657772  T
Q  137 cttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
    |||||||||||||||||| |||||||| ||||||||| |||| |||||  |||||||||||||||||||    
T  16657773 cttttcttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtgtatgaa 16657841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 7542250 - 7542103
Alignment:
Q  25 ggaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatt 124  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||||||   ||| |||||   | ||||| ||||| ||||||||||| |||||||    
T  7542250 ggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctttatt 7542151  T
Q  125 tatgggaatcgacttttcttcatcaatcactcgtgccaaatttgagga 172  Q
    |   || || |||||||||||||| |||| | | ||||| ||||||||    
T  7542150 tcaaggcattgacttttcttcatcgatcaatagggccaagtttgagga 7542103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 11999425 - 11999283
Alignment:
Q  31 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatggg 130  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| || |||  | ||||| | ||| ||||||||||| ||||||||   ||    
T  11999425 caaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagaatactatcatttcttgttgttgcaactattgaggtagattctttatttcaagg 11999326  T
Q  131 aatcgacttttcttcatcaatcactcgtgccaaatttgaggaa 173  Q
     || || ||||||||||| |||| ||| || || |||||||||    
T  11999325 cattgatttttcttcatccatcaatcgggcaaagtttgaggaa 11999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 43625421 - 43625256
Alignment:
Q  40 taaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcgactt 139  Q
    |||| ||||||||||| || || ||||| | |||||||| ||||||||||||||   | | |||| ||||||||||| |||||||    || || |||||    
T  43625421 taagaaggttgagaacggcatgcgagagaggaaaaaggacactgtcttttgcttcgttcagcactattgaggtagattctttattccgtggtattgactt 43625322  T
Q  140 ttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
     | ||||||||||||||||||||||||||| ||| | || |||||  ||||||| |||||| ||||    
T  43625321 cttttcatcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtttgaa 43625256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 14703427 - 14703252
Alignment:
Q  30 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgg 129  Q
    |||||| |||||||||| |||||||| || || |||||||||||||| | ||| |||||     ||||  ||||| ||||||||||||||||||||        
T  14703427 ccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagatgctttatttcaat 14703328  T
Q  130 gaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
    | || |||||||||||||| |||| | | ||||| ||||| ||| | || ||||||||||| ||||||||| ||||    
T  14703327 gcattgacttttcttcatcgatcaatagggccaagtttgaagaaatgaatatggacttttttaatgagtgtgtgaa 14703252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 12245556 - 12245698
Alignment:
Q  31 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatggg 130  Q
    ||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||| || |||  | ||||| | ||| ||||||||||| ||||||||   ||    
T  12245556 caaaagccttgaggagattgagaactgcttgtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattgaggtagattctttatttcaagg 12245655  T
Q  131 aatcgacttttcttcatcaatcactcgtgccaaatttgaggaa 173  Q
     || || ||||||||||| |||| ||| || || |||||||||    
T  12245656 cattgatttttcttcatccatcaatcgggcaaagtttgaggaa 12245698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 12234708 - 12234565
Alignment:
Q  30 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgg 129  Q
    |||||| |||| |||||||| |||||||| |||||||||||||||||   | |||||||   | ||||| | ||  ||||||||||| ||||||||   |    
T  12234708 ccaaaagccttgaggaggttaagaactgcttgtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattgaggtagattctttatttgaag 12234609  T
Q  130 gaatcgacttttcttcatcaatcactcgtgccaaatttgaggaa 173  Q
    | || || ||||||||||| |||| | | ||||| |||||||||    
T  12234608 gcattgatttttcttcatcgatcaatagggccaagtttgaggaa 12234565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 4678703 - 4678879
Alignment:
Q  26 gaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattt 125  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||||||| |||| ||| ||||| || ||||| ||||||||||| |||||| ||||||||    
T  4678703 gaacgcaaaacccttaaggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttga-gtagattctttattt 4678801  T
Q  126 atgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatg 203  Q
      |||||| |||||||||||||| || ||||||||||| ||||||||| |||| |||||| ||||||| |||||||||    
T  4678802 cagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 4678879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 15595046 - 15594878
Alignment:
Q  37 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcga 136  Q
    |||| ||||| ||||||||||| || || |||||||||||| |||| |||||| ||  ||| || ||  |||||||||||  ||||||||  || || ||    
T  15595046 ccttgaggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattgaggtagattgtttatttaacggtattga 15594947  T
Q  137 cttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
    ||| | ||||||  | |||||| |||| ||||| ||| | |||||||||||||| || || ||||||||    
T  15594946 cttcttttcatcggttactcgttccaagtttgaagaaatcaacatggacttttttaaggattgtatgaa 15594878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 28219930 - 28219762
Alignment:
Q  37 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcga 136  Q
    ||||||||||||||||||| || ||  |||| |||||||||| ||| ||||||||| ||||  ||||  ||||||||||| ||||||||   || || ||    
T  28219930 ccttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgaggtagattctttatttgaaggcattga 28219831  T
Q  137 cttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaa 205  Q
     || | ||||||||| |||||||| || ||||||||| | || |||||  |||||||||||||| ||||    
T  28219830 tttcttttcatcaattactcgtgctaagtttgaggaaatcaatatggatcttttcaatgagtgtttgaa 28219762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 43744826 - 43744740
Alignment:
Q  39 ttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattt 125  Q
    ||||||||||||||||| || || || || |||||||||| | | ||||||||| |||| |||||| ||||||||||| ||||||||    
T  43744826 ttaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattctttattt 43744740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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