View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_606 (Length: 227)
Name: NF10954A_low_606
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_606 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26992855 - 26992629
Alignment:
| Q |
1 |
tcaaatctaggtatggtaggttggacgaaattgctattctctgctgccattgtcgttcctttaacaaacctttggtgtttctctcacagcgagtctcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992855 |
tcaaatctaggtatggtaggttggacgaaattgctattctctgctgccattgtcgttcctttaacaaacctttggtgtttctctcacagcgagtctcaca |
26992756 |
T |
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| Q |
101 |
gtgtttcactcttactggagttctaactctcactaagaaaacttcagtttctcaactctcaatttccaaaacaccaggccccgtgagaagctctgatacc |
200 |
Q |
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| T |
26992755 |
gcgtttcactcttactggagttctaactctcactaagaaaacttcagtttctcaactctcaatttccaaaacaccaggccccgtgagaagctctgatacc |
26992656 |
T |
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| Q |
201 |
ataattgttgaacataaaaattaaggg |
227 |
Q |
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| T |
26992655 |
ataattgttgaacataaaaattaaggg |
26992629 |
T |
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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1755480 - 1755585
Alignment:
| Q |
1 |
tcaaatctaggtatggtaggttggacgaaattgctattctctgctgccattgtcgttcctttaacaaacctttggtgtttctctcacagcgagtctcaca |
100 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||| |||| ||||||||| || |||||||| || ||||||||| |
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| T |
1755480 |
tcaaatcaaggtatggcaggttggacgaaattgctattctctgctgccattattgttcttttatcaaacctttagtatttctctctcaattagtctcaca |
1755579 |
T |
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| Q |
101 |
gtgttt |
106 |
Q |
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|||||| |
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| T |
1755580 |
gtgttt |
1755585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 1755590 - 1755652
Alignment:
| Q |
129 |
ctcactaagaaaacttcagtttctcaactctcaatttc-caaaacaccaggccccgtgagaag |
190 |
Q |
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| T |
1755590 |
ctcaccaagaaaacttcaatttctcaactctcaaattctaaaaacaccagaccccgtgagaag |
1755652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 12793796 - 12793722
Alignment:
| Q |
133 |
ctaagaaaacttcagtttctcaactctcaatttccaaaa-caccaggccccgtgagaagctctgataccataatt |
206 |
Q |
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||||||||||| |||||||| | ||||||| |||| ||| ||||||||| |||||||||||||||||||| |||| |
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| T |
12793796 |
ctaagaaaactgcagtttcttagctctcaaattcccaaatcaccaggcctcgtgagaagctctgataccacaatt |
12793722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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