View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_608 (Length: 227)
Name: NF10954A_low_608
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_608 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 50222720 - 50222872
Alignment:
| Q |
75 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
174 |
Q |
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| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
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| Q |
175 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctagg |
227 |
Q |
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| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctagg |
50222872 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 50222566 - 50222640
Alignment:
| Q |
1 |
agaatcatagagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
75 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50222566 |
agaatcttagagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
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