View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_612 (Length: 227)
Name: NF10954A_low_612
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_612 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2776021 - 2775796
Alignment:
| Q |
1 |
tttaggctgtcgcaggtcaagggctgcacaacactcaaaattatggcatgcgattgagttcacacctctactctaccaaattaggtctgtcgtttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2776021 |
tttaggctgtcgcaggtcaagggctgcacaacactcaaaattatggcatgcgattgagttcacacctctactctaccaaattaggtctgtcgtttctctt |
2775922 |
T |
|
| Q |
101 |
acagttttttgtctgcataataattatagaatagttagcaaacaaaatgattgttttctagtttctgcaccaaatcattcacaacatttacaatgaggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2775921 |
acagttttttgtctgcataataattatagaatagttagcaaacaaaatgattgttttctagtttctgcaccaaatcattcacaacatttacaatgaggat |
2775822 |
T |
|
| Q |
201 |
gatgtttcttttttggttctgtcatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2775821 |
gatgtttcttttttggttctgtcatg |
2775796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University