View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_614 (Length: 227)
Name: NF10954A_low_614
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_614 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 16270526 - 16270303
Alignment:
| Q |
4 |
aacagtaaaggagaagaaaacagttcaggaaagcatgcggaagaaactagtgatgagccacatcctaagaaagactacatccatgtccgagctagaaggg |
103 |
Q |
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| T |
16270526 |
aacagtaaaggagaagaaaacagttcaggaaagcatgcggaagaaactagtgatgagccacatcctaagaaagactacatccatgtccgagctagaaggg |
16270427 |
T |
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| Q |
104 |
gtcaagctactgatagccacagtcttgcagaaagagtattttcctacttcctatttctcacaaagtgtatttttatagggtgttcaatttcttattttca |
203 |
Q |
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| T |
16270426 |
gtcaagctactgatagccatagtcttgcagaaagagtattttcctacttcctatttctcacaaagtgtatttttatagggtgttcaatttcttattttca |
16270327 |
T |
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| Q |
204 |
aataatattgatcctcaaagatat |
227 |
Q |
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| T |
16270326 |
aataatattgatcctcaaagatat |
16270303 |
T |
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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 26003068 - 26002999
Alignment:
| Q |
66 |
tcctaagaaagactacatccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaa |
135 |
Q |
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| T |
26003068 |
tcctaagcaagattacatccatgttcgagctagaaggggtcaagctactgatagccacagtcttgcagaa |
26002999 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 3451186 - 3451254
Alignment:
| Q |
73 |
aaagactacatccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaagagta |
141 |
Q |
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| T |
3451186 |
aaagattacattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaacgagta |
3451254 |
T |
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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 40311448 - 40311508
Alignment:
| Q |
82 |
atccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaagagtat |
142 |
Q |
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| T |
40311448 |
atccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctgaaagggtat |
40311508 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 18810331 - 18810393
Alignment:
| Q |
79 |
tacatccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaagagta |
141 |
Q |
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| T |
18810331 |
tacattcatgtcagagcaagaagaggtcaagctactgatagccatagtcttgcagaaagagta |
18810393 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 45175764 - 45175819
Alignment:
| Q |
82 |
atccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaag |
137 |
Q |
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| T |
45175764 |
atccacgtccgagcaagaaggggtcaggccactgatagccacagccttgctgaaag |
45175819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 31420787 - 31420837
Alignment:
| Q |
92 |
gagctagaaggggtcaagctactgatagccacagtcttgcagaaagagtat |
142 |
Q |
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| T |
31420787 |
gagcaagaagaggtcaagctactgatagtcacagtctagcagaaagggtat |
31420837 |
T |
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