View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_619 (Length: 226)
Name: NF10954A_low_619
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_619 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 33629690 - 33629525
Alignment:
| Q |
36 |
gatagaggtgcgcgtttagaagcttatttccagtttatttggacctatcttattgctcaagtatatttaagaaaactcaacgaaaacattgctgttcggc |
135 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
33629690 |
gatagaggtgcgcgtgtagaagcttatttccagtttatttggacctatcttattgctcaagtat--ttaagaaaacttaacgaaaacattgctgttcggc |
33629593 |
T |
|
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaacagtagctaact |
203 |
Q |
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| T |
33629592 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaacggtagctaact |
33629525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 38909105 - 38909037
Alignment:
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaa-ttacacatttaaccccaacagtagctaact |
203 |
Q |
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|||||||| ||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||| |
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| T |
38909105 |
tgttcccacttcagattttgtttgaaaacacataaaaaattaaacatttaaccccaacagtagctaact |
38909037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 36941475 - 36941435
Alignment:
| Q |
145 |
ttcagattttgcttgaaaacacatggaaattacacatttaa |
185 |
Q |
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| T |
36941475 |
ttcagattttgcttaaaaacacatggaaattacacgtttaa |
36941435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 36944457 - 36944514
Alignment:
| Q |
144 |
tttcagattttgcttgaaaacacatggaaattacacatttaaccccaacagtagctaa |
201 |
Q |
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|||||| ||||||||||||||| || |||||||| ||||||| ||||||||||||| |
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| T |
36944457 |
tttcagtttttgcttgaaaacatgtgaaaattacatatttaacatcaacagtagctaa |
36944514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 28738690 - 28738757
Alignment:
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaacagtagctaact |
203 |
Q |
| |
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|||||||||||||| ||| |||| |||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
28738690 |
tgttcccatttcagttttcgcttaaaaacacatgaaaattacacatttaacctcaacgatagctaact |
28738757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 28738863 - 28738808
Alignment:
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaa |
191 |
Q |
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|||||||| ||||| |||| |||||||||||||| |||||||||||| ||| |||| |
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|
| T |
28738863 |
tgttcccacttcagtttttacttgaaaacacatgaaaattacacattaaactccaa |
28738808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 2732633 - 2732700
Alignment:
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaacagtagctaact |
203 |
Q |
| |
|
|||||||| || || ||||| ||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
2732633 |
tgttcccactttagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaact |
2732700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 28122063 - 28122007
Alignment:
| Q |
145 |
ttcagattttgcttgaaaacacatggaaattacacatttaaccccaacagtagctaac |
202 |
Q |
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|||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||| |
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| T |
28122063 |
ttcagattttgcttgaaa-cacatagaaattatacatttaaccccaacgatagctaac |
28122007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 46221773 - 46221721
Alignment:
| Q |
151 |
ttttgcttgaaaacacatggaaattacacatttaaccccaacagtagctaact |
203 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
46221773 |
ttttgctagaaaacacatagaaattacacatttgaccataacagtagctaact |
46221721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 56061640 - 56061673
Alignment:
| Q |
151 |
ttttgcttgaaaacacatggaaattacacattta |
184 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
56061640 |
ttttgcttgaaaacacatgaaaattacacattta |
56061673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 10228695 - 10228655
Alignment:
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaatta |
176 |
Q |
| |
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|||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
10228695 |
tgtttccagttcagtttttgcttgaaaacacatggaaatta |
10228655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 33102394 - 33102338
Alignment:
| Q |
136 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaac |
192 |
Q |
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|||| ||| |||||||||||||||||||||||| | |||||| |||||| |||||| |
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| T |
33102394 |
tgtttccacttcagattttgcttgaaaacacatcaagattacatatttaatcccaac |
33102338 |
T |
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