View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_620 (Length: 226)

Name: NF10954A_low_620
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_620
NF10954A_low_620
[»] chr2 (2 HSPs)
chr2 (18-205)||(31340024-31340211)
chr2 (18-205)||(31333294-31333481)
[»] chr3 (2 HSPs)
chr3 (49-205)||(1656899-1657055)
chr3 (18-50)||(7405914-7405946)
[»] chr4 (2 HSPs)
chr4 (49-192)||(644504-644647)
chr4 (79-113)||(546594-546628)
[»] chr8 (2 HSPs)
chr8 (49-115)||(28246588-28246654)
chr8 (18-50)||(25640066-25640098)
[»] scaffold0576 (1 HSPs)
scaffold0576 (18-50)||(8394-8426)
[»] chr7 (1 HSPs)
chr7 (18-50)||(4683724-4683756)
[»] chr6 (3 HSPs)
chr6 (18-50)||(15363623-15363655)
chr6 (49-87)||(11936570-11936608)
chr6 (49-87)||(11948550-11948588)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 31340024 - 31340211
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340024 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 31340123  T
Q  118 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340124 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 31340211  T

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Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 31333294 - 31333481
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31333294 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 31333393  T
Q  118 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31333394 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgagcatgacaaatgaataagttattaagctattgattgtg 31333481  T

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Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 1657055 - 1656899
Alignment:
Q  49 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657055 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 1656956  T
Q  149 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1656955 tgctcatcatgttatgtgcgcatgacaaatgaataagttattaagctattgattgtg 1656899  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 7405914 - 7405946
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatg 50  Q
    |||||||||||||||||||||||||||||||||    
T  7405914 aatatcacagttcatgaaaacttggatccaatg 7405946  T

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Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 644647 - 644504
Alignment:
Q  49 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 148  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  644647 tgctatgaagtttgaattgtgaatttctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatata 644548  T
Q  149 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  644547 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 644504  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 546628 - 546594
Alignment:
Q  79 tgttttttgttttcagatttacttctatgagaaat 113  Q
    ||||| |||||||||||||||||||||||||||||    
T  546628 tgtttattgttttcagatttacttctatgagaaat 546594  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 28246588 - 28246654
Alignment:
Q  49 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246588 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta 28246654  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 25640098 - 25640066
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatg 50  Q
    |||||||||||||||||||||||||||||||||    
T  25640098 aatatcacagttcatgaaaacttggatccaatg 25640066  T

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Target: scaffold0576 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 8426 - 8394
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatg 50  Q
    |||||||||||||||||||||||||||||||||    
T  8426 aatatcacagttcatgaaaacttggatccaatg 8394  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4683724 - 4683756
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatg 50  Q
    |||||||||||||||||||||||||||||||||    
T  4683724 aatatcacagttcatgaaaacttggatccaatg 4683756  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 15363655 - 15363623
Alignment:
Q  18 aatatcacagttcatgaaaacttggatccaatg 50  Q
    |||||||||||||||||||||||||||||||||    
T  15363655 aatatcacagttcatgaaaacttggatccaatg 15363623  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 11936570 - 11936608
Alignment:
Q  49 tgctatgaagtttgaattgtgaatttataatgttttttg 87  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  11936570 tgctatgaagtttgaattgtgaatttataaagttgtttg 11936608  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 11948550 - 11948588
Alignment:
Q  49 tgctatgaagtttgaattgtgaatttataatgttttttg 87  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  11948550 tgctatgaagtttgaattgtgaatttataaagttgtttg 11948588  T

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