View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_621 (Length: 226)
Name: NF10954A_low_621
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_621 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24639506 - 24639287
Alignment:
| Q |
1 |
aatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639506 |
aatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaa |
24639407 |
T |
|
| Q |
101 |
agatacagcagcacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639406 |
agatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaatt |
24639307 |
T |
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| Q |
201 |
ctacattgtttcctacatat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
24639306 |
ctacattgtttcctacatat |
24639287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 52491260 - 52491479
Alignment:
| Q |
1 |
aatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491260 |
aatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaa |
52491359 |
T |
|
| Q |
101 |
agatacagcagcacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491360 |
agatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaatt |
52491459 |
T |
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| Q |
201 |
ctacattgtttcctacatat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
52491460 |
ctacattgtttcctacatat |
52491479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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