View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_629 (Length: 224)
Name: NF10954A_low_629
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_629 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 33790973 - 33791174
Alignment:
| Q |
23 |
cagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33790973 |
cagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatg |
33791072 |
T |
|
| Q |
123 |
tgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaact |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33791073 |
tgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaact |
33791172 |
T |
|
| Q |
223 |
gt |
224 |
Q |
| |
|
|| |
|
|
| T |
33791173 |
gt |
33791174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
99 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
|
|
| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
|
| Q |
199 |
agacgtgatggatta |
213 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University