View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_63 (Length: 401)
Name: NF10954A_low_63
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_63 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 4322516 - 4322916
Alignment:
| Q |
1 |
aatattcaaaatcaaaatatcgaattaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaatgtacatgcaacgatgaagct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4322516 |
aatattcaaaatcagaatatcgaattaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagct |
4322615 |
T |
|
| Q |
101 |
ttatttaattaagatatatgaagaaaatatacgtgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtcttcttgtctttagccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4322616 |
ttatttaattaagatatatgaagaaaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaa |
4322715 |
T |
|
| Q |
201 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4322716 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatcca |
4322815 |
T |
|
| Q |
301 |
atgataaaaatgaatgaaaaataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
400 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4322816 |
atgataaaaatgaataaaacataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
4322915 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
|
|
| T |
4322916 |
a |
4322916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 41124498 - 41124398
Alignment:
| Q |
154 |
atgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
253 |
Q |
| |
|
|||||||||| |||||||||||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
41124399 |
T |
|
| Q |
254 |
c |
254 |
Q |
| |
|
| |
|
|
| T |
41124398 |
c |
41124398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University