View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_631 (Length: 224)

Name: NF10954A_low_631
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_631
NF10954A_low_631
[»] chr5 (3 HSPs)
chr5 (20-212)||(11336254-11336453)
chr5 (42-147)||(43379448-43379553)
chr5 (42-147)||(43378572-43378677)
[»] chr6 (3 HSPs)
chr6 (108-147)||(13208225-13208264)
chr6 (87-145)||(3163534-3163592)
chr6 (42-147)||(13207346-13207451)
[»] chr2 (2 HSPs)
chr2 (94-141)||(3466658-3466705)
chr2 (94-147)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (56-122)||(3582072-3582138)
[»] chr7 (2 HSPs)
chr7 (94-147)||(35752377-35752430)
chr7 (94-142)||(46294693-46294741)
[»] chr3 (1 HSPs)
chr3 (42-110)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 11336254 - 11336453
Alignment:
Q  20 catgtaaccaacacaaatatacgagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacata 119  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||    
T  11336254 catgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctccattttccccggtccagcttttaggtgtgtgacatgtgacaaacata 11336353  T
Q  120 aaagcaagggttaggattaaaaggtttgnnnnnnngaaa-----ctagatga--acaaaaaagcctacacgtgcgtctcctcttctcttctctatgatac 212  Q
    ||||||||||||||||||||||||||||        |||      |||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  11336354 aaagcaagggttaggattaaaaggtttggaaaaaaaaaaactatttagatgaacacaaaaaagcctacacgcgcgtctcctcttctcttctctctgatac 11336453  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  42 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 141  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  142 ggtttg 147  Q
    ||||||    
T  43379453 ggtttg 43379448  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  42 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 141  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  142 ggtttg 147  Q
    ||||||    
T  43378672 ggtttg 43378677  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  108 gtgacaaacataaaagcaagggttaggattaaaaggtttg 147  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  87 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 145  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  42 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 141  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  142 ggtttg 147  Q
    | ||||    
T  13207446 gatttg 13207451  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  94 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 141  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  94 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 147  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  56 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 122  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  94 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 147  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 46294693 - 46294741
Alignment:
Q  94 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaag 142  Q
    ||||||| |||||| ||||||  |||||| |||||||||||||||||||    
T  46294693 tagatgtgtgacatatgacaataataaaatcaagggttaggattaaaag 46294741  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 40613868 - 40613800
Alignment:
Q  42 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtg 110  Q
    ||||||||||||  |||||| || |||||||||||| |||| || || ||| ||||||| |||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtg 40613800  T

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