View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_632 (Length: 224)
Name: NF10954A_low_632
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_632 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 46898807 - 46899001
Alignment:
| Q |
16 |
acatcaatcgtataattgggtttgaatagataaattttcagcaataatcgaaaaattctttagaattcaagttgtttttgtagaactagtattttgtaat |
115 |
Q |
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| T |
46898807 |
acatcaatcgtataattgggtttgaatagataaattttcagcaataatcgaaaaattctttagaattcaagttgtttttgtagaactagtattttgcaat |
46898906 |
T |
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| Q |
116 |
aaaaccttgtctgtaatcatttttgaatgcaatttaaaagtcaattgttttaaaatatgtgggatgctctgacaaaacctttgcctattttcttc |
210 |
Q |
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| T |
46898907 |
aaaaccttgtctgtaatcattttttaatgcaatttaaaagtcaattgttttaaaatatgtgggatgctctgacaaaacctttgcctattttcttc |
46899001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 46892277 - 46892405
Alignment:
| Q |
29 |
aattgggtttgaatagataaattttcagcaataatcgaaaaattctttagaattcaagttgtttttgtagaactagtattttgtaataaaaccttgtctg |
128 |
Q |
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| T |
46892277 |
aattgggtctgaata-atatattttcagcaataattgaaaaattgtttagaattcactcggtttttgtagaactagtcttttgcagtaaaaccttg-cag |
46892374 |
T |
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| Q |
129 |
taatcatttttgaatgcaatttaaaagtcaa |
159 |
Q |
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| T |
46892375 |
taatcattttagaatgcaaattaaaagtcaa |
46892405 |
T |
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