View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_633 (Length: 224)
Name: NF10954A_low_633
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_633 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
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| [»] chr6 (5 HSPs) |
| |
|
| [»] chr1 (6 HSPs) |
| |
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| [»] chr4 (11 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33440573 - 33440350
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatgaaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33440573 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacaggtgataaaaattaaaacaacacaaaagtgtatcaacctctaattaatcctaaa |
33440474 |
T |
|
| Q |
101 |
actaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacga |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33440473 |
actaactaaaggtcttcgatgcggtgattgaaccctctgtcaacacggaggcggttcatgtaccttcaactccctacaacaatagcagcaagttaaacga |
33440374 |
T |
|
| Q |
201 |
tcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33440373 |
ccctttcgagccgcacaatccaaa |
33440350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 7489140 - 7488920
Alignment:
| Q |
6 |
acccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaact |
103 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||| || || |||||||| |||||| |||| ||||||| | ||||||||||||||||| |
|
|
| T |
7489140 |
acccagtaaaaccacacaagagtgtaagtcgaccccaaacgagtaatagaaaaattaaaacaacacacaagtttatcaatatgtaattaatcctaaaact |
7489041 |
T |
|
| Q |
104 |
aactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcc |
203 |
Q |
| |
|
|| |||||||||| || |||||||||||||||| |||||| | |||||||||||| | | ||||| ||||||||| || || |||| ||||||| || |
|
|
| T |
7489040 |
aattaaaggtcttttgtgcggtgattgaaccctctatcaacatgtaggcggttcatgtagcatcaaccccctgcaaccatgacatcaagctaaacgaccc |
7488941 |
T |
|
| Q |
204 |
tttcgagccgcacaatccaaa |
224 |
Q |
| |
|
|||| || | ||||||||||| |
|
|
| T |
7488940 |
tttcaagtcccacaatccaaa |
7488920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 34935646 - 34935546
Alignment:
| Q |
110 |
aggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcctttcga |
209 |
Q |
| |
|
|||| |||||| ||||||| || || ||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||| |||| ||||| |||||||| |
|
|
| T |
34935646 |
aggtattcgatttggtgatggagccatctgtcaacacggaggcggttcatgtaccatcaactccctacaacaatggcagccagtttaacgaccctttcga |
34935547 |
T |
|
| Q |
210 |
g |
210 |
Q |
| |
|
| |
|
|
| T |
34935546 |
g |
34935546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 21490610 - 21490531
Alignment:
| Q |
74 |
gtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcg |
153 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| |||||| |
|
|
| T |
21490610 |
gtgtatcaacctctgattaatcctaaaagtaactaaaggtcttcgatgcggtgattgaaccatcagtcaacactgaggcg |
21490531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 38737539 - 38737487
Alignment:
| Q |
72 |
aagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtgg |
124 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
38737539 |
aagtgtatcaacctctaattaatcttaaaactaattaaaggtcttggatgtgg |
38737487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 14107662 - 14107534
Alignment:
| Q |
87 |
taattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttc-atgcaccttcaactccctgcaacaa--t |
183 |
Q |
| |
|
|||||||||| |||||||| |||||| ||| || |||||||| ||| || ||||| ||||| |||| || ||| ||| |||||||||||| |||| | |
|
|
| T |
14107662 |
taattaatccaaaaactaatcaaaggtgttcattgcggtgattggaccgtccgtcaatacggaagcggatccatgtaccatcaactccctgctacaaaat |
14107563 |
T |
|
| Q |
184 |
agcagcaagttaaacgatcctttcgagcc |
212 |
Q |
| |
|
||||||||| || ||| ||||||||||| |
|
|
| T |
14107562 |
agcagcaagcaaatcgaacctttcgagcc |
14107534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 14417619 - 14417491
Alignment:
| Q |
87 |
taattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttc-atgcaccttcaactccctgcaacaa--t |
183 |
Q |
| |
|
|||||||||| |||||||| |||||| ||| || |||||||| ||| || ||||| ||||| |||| || ||| ||| |||||||||||| |||| | |
|
|
| T |
14417619 |
taattaatccaaaaactaatcaaaggtgttcattgcggtgattggaccgtccgtcaatacggaagcggatccatgtaccatcaactccctgctacaaaat |
14417520 |
T |
|
| Q |
184 |
agcagcaagttaaacgatcctttcgagcc |
212 |
Q |
| |
|
||||||||| || ||| ||||||||||| |
|
|
| T |
14417519 |
agcagcaagcaaatcgaacctttcgagcc |
14417491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 36204139 - 36204355
Alignment:
| Q |
9 |
cagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaactaac |
106 |
Q |
| |
|
|||| ||||||||||| |||| || ||||||||||||||| ||| ||||| || |||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
36204139 |
cagtaaaaccacacaagagtgtaaatcgaccccaaacgggagatacaaaaataaaaacaacacacaagtgtatcaacctctaattaatcctaaaactaat |
36204238 |
T |
|
| Q |
107 |
taaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatccttt |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| |||| |||||||| ||| ||| |||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
36204239 |
taaaggtcttcgatgcggtgattgaaccctcggtcaacacagaggtggttcatgtaccatcagctccctgcaacaatggcaacaagttaaacgacccttt |
36204338 |
T |
|
| Q |
207 |
cgagccgcacaatccaa |
223 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
36204339 |
cgagcctcacagtccaa |
36204355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 3552652 - 3552516
Alignment:
| Q |
81 |
aatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaac |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
3552652 |
aatctctaattaatcctaaaactaactaaaggttttcgatgtggtgattgaaccctttctcaacacggatgcggttcatgtaccatcaactccctgcaac |
3552553 |
T |
|
| Q |
181 |
aatagcagcaagttaaacgatcctttcgagccgcaca |
217 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||| |||| |
|
|
| T |
3552552 |
aatggcagcaagctaaacaaccctttcgagcctcaca |
3552516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18747418 - 18747194
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| ||||||| | ||||||| |||| ||||| || |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
18747418 |
acctaacccagtaaaaccacacaagagtgtaagtcgatctcaaacggatgatacaaaaataaaaacaacacataagtgtatcaacctctaattaatccta |
18747319 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaac |
198 |
Q |
| |
|
|||| || || |||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||| ||| |||||| ||||| | |||||||||||| |
|
|
| T |
18747318 |
aaacaaattagaggtcttcgatgcggtgattgaaccctcggtcaacacggaggaggttcatgtaccatcagctccctacaacattgaaagcaagttaaac |
18747219 |
T |
|
| Q |
199 |
gatcctttcgagccgcacaatccaa |
223 |
Q |
| |
|
| ||||||||||| |||| ||||| |
|
|
| T |
18747218 |
aaccctttcgagcctcacagtccaa |
18747194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 19378335 - 19378144
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatgaaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaa |
100 |
Q |
| |
|
|||| ||||||| |||||||||| |||| |||||||||||||| ||||||| ||| | | || |||| ||||||||| ||||||||||||||||| |
|
|
| T |
19378335 |
acctaacccagtaaaaccacacaggagtgtaagtcgaccccaaatgggtgatacaaa---aataaaaacaa--gtgtatcaacctctaattaatcctaaa |
19378241 |
T |
|
| Q |
101 |
actaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaa |
197 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||| ||| ||| |||| ||||||||| ||||||||||||| |
|
|
| T |
19378240 |
gctaattaaagatcttcgatgcggtgattgaaccctcagtcaacacggaggtggttcatgtaccatcagctccgtgcaacaatggcagcaagttaaa |
19378144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 25410557 - 25410768
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||| ||| ||| ||||||| |||| ||||||||| |||||||||||| |||||||| |||||| | ||||| || ||||||||||||||| |
|
|
| T |
25410557 |
acctaacctagtaaaatcacacaagagtgtaagtcgacctcaaacgggtgatacaaaaattaaaacaacacacgaatgtattaacctctaattaatccta |
25410656 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaac |
198 |
Q |
| |
|
|||| || |||||||||| |||| | ||||||||| ||| ||||||||||||||||||||||||| || |||| | ||||||||||||||||| ||||| |
|
|
| T |
25410657 |
aaaccaattaaaggtctttgatgcgatgattgaactctcgatcaacacggaggcggttcatgcaccatcgactcgccgcaacaatagcagcaagctaaac |
25410756 |
T |
|
| Q |
199 |
gatcctttcgag |
210 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
25410757 |
gaccatttcgag |
25410768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 19323082 - 19323210
Alignment:
| Q |
84 |
ctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaac-aa |
182 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||| || ||| || ||||||||||| | |||||||| | | |||||||| |||||| || |
|
|
| T |
19323082 |
ctctaattaatcctaaaactacttaaaggtcttcaatgcagtgactggaccgtccgtcaacacggaagtggttcatgta-catcaactccatgcaactaa |
19323180 |
T |
|
| Q |
183 |
tagcagcaagttaaacgatcctttcgagcc |
212 |
Q |
| |
|
| ||| |||| |||||||||||||| |||| |
|
|
| T |
19323181 |
tggcaacaagctaaacgatcctttcaagcc |
19323210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 31615441 - 31615584
Alignment:
| Q |
72 |
aagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgat------gtggtgattgaaccctctgtcaacacggaggcggttcatgcacct |
165 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||| |||||||||||||| || |||||||||| || ||| || ||||||| ||||| ||| |
|
|
| T |
31615441 |
aagtgtaacaacctctaattaatcctagaactaattaaaggtcttcgatcagtaattgatgattgaaccttcagtccactgtgaggcgggtcatgtacc- |
31615539 |
T |
|
| Q |
166 |
tcaactccctgcaacaatagcagcaagttaaacgatcctttcgag |
210 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
31615540 |
acaacttcctgcaacattagcagcaagctaaacgaccctttcgag |
31615584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 2900554 - 2900713
Alignment:
| Q |
65 |
aacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcacc |
164 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
2900554 |
aacacacaagtgtatcaacctctaattaatcctaaaactaactaaaggtctttgatgcggtgattgaaccctccgtcaacacggacacgattcatgtacc |
2900653 |
T |
|
| Q |
165 |
ttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||| | ||||||||| |||| |||||| |
|
|
| T |
2900654 |
atcaactccctacaacaatggcagcaagctaaacgaccatttcgagcctcacagtccaaa |
2900713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 6002396 - 6002553
Alignment:
| Q |
66 |
acacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcacct |
165 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
6002396 |
acacaagagtgtatcaacctctaattaatgctaaaactaattaaagagtttcgatgtggtgattgaaccctcggtcaacacggaggcggttcatgtacca |
6002495 |
T |
|
| Q |
166 |
tcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaa |
223 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||||| | ||||||||| |||||||||| |
|
|
| T |
6002496 |
tcaactccctgcagcaatgtcagcaagctaaacgaccgtttcgagcctcacaatccaa |
6002553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 8839139 - 8839297
Alignment:
| Q |
65 |
aacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcacc |
164 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||||||||| |||| ||||||||| |||||||||||||| |||||||| ||| |||||||| ||| |
|
|
| T |
8839139 |
aacacacaagtgtatcaacctctaattattcctaaaactaattaaaaatcttcgatgcagtgattgaaccctcactcaacacgaaggtggttcatgtacc |
8839238 |
T |
|
| Q |
165 |
ttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaa |
223 |
Q |
| |
|
||| |||||||||||||| |||||||||||| ||| ||||||||||| |||| ||||| |
|
|
| T |
8839239 |
atcagctccctgcaacaatggcagcaagttaaccgaccctttcgagcctcacagtccaa |
8839297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 30230466 - 30230617
Alignment:
| Q |
64 |
taacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcac |
163 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| || | |||||| || |
|
|
| T |
30230466 |
taacacacaagtgtatcaacctctaattaaccctaaaactaattaaaggtcttcgat-cggtgattgaaccctcagtcaacactgaagattttcatgtac |
30230564 |
T |
|
| Q |
164 |
cttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcaca |
217 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||| || ||||||||||| |||| |
|
|
| T |
30230565 |
c-tcaactccctgcaacaatggcagcaagctaaatgaccctttcgagcctcaca |
30230617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 15915853 - 15915968
Alignment:
| Q |
67 |
cacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcacctt |
166 |
Q |
| |
|
|||| ||||||||||| |||| ||||||| |||||||| ||||||||||||||| || |||||| | || |||||| ||||||||||||| ||| | |
|
|
| T |
15915853 |
cacataagtgtatcaacctcttattaatctaaaaactaattaaaggtcttcgatgcggagattgagctcttaaccaacactgaggcggttcatgtacc-t |
15915951 |
T |
|
| Q |
167 |
caactccctgcaacaat |
183 |
Q |
| |
|
|||| ||||||| |||| |
|
|
| T |
15915952 |
caacgccctgcagcaat |
15915968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27287225 - 27287001
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatgaaaa--ttaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| ||||||| |||||| ||||||| |||| | || |||| ||||||||||| ||||||||||| ||| |
|
|
| T |
27287225 |
acctaacccagtaaaaccacacaagagtgtaagtcgatcccaaatgggtgattaaaaaataaaaacaacatgcaagtgtatcaacctctaattaattcta |
27287126 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaac |
198 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||||||||||| ||||||||||||| |||||||| ||| ||| |||||||||||||| ||| ||| |||||| |
|
|
| T |
27287125 |
aaactaattaaaagtctttgatgcggtgattgaaccctcagtcaacacggaggtggttcatgtaccatcagctccctgcaacaatggcatcaatttaaac |
27287026 |
T |
|
| Q |
199 |
gatcctttcgagccgcacaatccaa |
223 |
Q |
| |
|
|| ||||||||||| |||| ||||| |
|
|
| T |
27287025 |
gaccctttcgagcctcacagtccaa |
27287001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 36017130 - 36017251
Alignment:
| Q |
79 |
tcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgca |
178 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||| |
|
|
| T |
36017130 |
tcaacctctaattaatcctaaaactaactaaaggtctttgatgcggtgattgaaccctttgtcaacacgaaggtggttcatgtaccatcaactccctgca |
36017229 |
T |
|
| Q |
179 |
acaatagcagcaagttaaacga |
200 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
36017230 |
acaatggcagcaagttaaacga |
36017251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29959722 - 29959943
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||||||| |||||||||| |||| || || ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
29959722 |
acctaacccagtaaaaccacacaggagtgtaaatcagccccaaacgggtgatacaaaaattaaaacaacacacaagtgtatcaatctctaattaatccta |
29959821 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaac |
198 |
Q |
| |
|
||||||||| || ||||| | ||||||||||||||| ||| | |||||| | ||||||| ||| |||||| |||||||||||||| |||| ||||| |
|
|
| T |
29959822 |
aaactaactcaatgtctt----gcggtgattgaaccctcggtcgatacggagacagttcatgtaccatcaactttctgcaacaatagcaacaagataaac |
29959917 |
T |
|
| Q |
199 |
gatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
|| ||||||||||| ||||||||||| |
|
|
| T |
29959918 |
gaccctttcgagcctcacaatccaaa |
29959943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 12838196 - 12837977
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||||||| |||| |||||| |||| |||||||||| |||||| |||| |||||||| |||||| || |||||| |||| |||||||||||| |
|
|
| T |
12838196 |
acctaacccagtaaaactacacaagagtgtaagtcgacccgaaacggatgatacaaaaattaaaacaacacataattgtatcgatctataattaatccta |
12838097 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaac |
198 |
Q |
| |
|
||||||| |||| ||||| |||||| ||||||||||||| | |||||| || |||||||| ||| |||||||||||||||||| ||| |||| | ||| |
|
|
| T |
12838096 |
aaactaattaaaagtctttgatgtgatgattgaaccctcagccaacactagggtggttcatgtacc-tcaactccctgcaacaattgcatcaagcttaac |
12837998 |
T |
|
| Q |
199 |
gatcctttcgagccgcacaat |
219 |
Q |
| |
|
|| ||||||||||| |||||| |
|
|
| T |
12837997 |
gaccctttcgagccccacaat |
12837977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 27766432 - 27766542
Alignment:
| Q |
9 |
cagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaactaac |
106 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| ||| |||||||| ||||| || |||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
27766432 |
cagtaaaaccacacaagagtctaagtcgacctcaaccgggtgatacaaaaataaaaacaacacacgagtgtatcaacctctaattaatcctaaaactaat |
27766531 |
T |
|
| Q |
107 |
taaaggtcttc |
117 |
Q |
| |
|
||||||||||| |
|
|
| T |
27766532 |
taaaggtcttc |
27766542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 17798713 - 17798574
Alignment:
| Q |
85 |
tctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttc-atgcaccttcaactccctgcaacaat |
183 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||| |||||||||||| | | | ||||||||||| |||| || ||| ||| ||||||||||||||||| |
|
|
| T |
17798713 |
tctatttaatcataaaactaatcaaaggtcttcaatgtggtgattggatcgttcgtcaacacggaagcggatctatgtaccatcaactccctgcaacaaa |
17798614 |
T |
|
| Q |
184 |
agcagcaagttaaacgatcctttcgagccgcacaatccaa |
223 |
Q |
| |
|
| ||||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
17798613 |
gataataagttaaacgacccttttgagccccacaaaccaa |
17798574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 40214248 - 40214037
Alignment:
| Q |
14 |
aaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaactaactaaag |
111 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||| ||||| |||||||| |||||| ||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
40214248 |
aaaccatacaagagtgtaagtcgaccccaaacggatgatgcaaaaattaaaacaacacacaagtgtatcaaccttgaattaatcctaaaactaaataaag |
40214149 |
T |
|
| Q |
112 |
gtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagc |
211 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||||||| ||| |||||| ||||||| ||| | |||||| ||||||| ||||||||| |
|
|
| T |
40214148 |
atcttcgatgcggtgattgaaccctctttcaatgcggaggcggttcatgtaccatcaacttcctgcaataat-ggagcaagctaaacgactctttcgagc |
40214050 |
T |
|
| Q |
212 |
cgcacaatccaaa |
224 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
40214049 |
ctcacagtccaaa |
40214037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 17895600 - 17895499
Alignment:
| Q |
21 |
acaatagtgcaagtcgaccccaaacgggtgatgaaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgat |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||| |||| ||||||| |||| |||||| || | ||||||||||||||||||||||| |||||||| |
|
|
| T |
17895600 |
acaatagtgtaagtcgaccccaaacgggtgataaaacttaaaataacacataagtctatcaacctattattaatcctaaaactaactaaagctcttcgat |
17895501 |
T |
|
| Q |
121 |
gt |
122 |
Q |
| |
|
|| |
|
|
| T |
17895500 |
gt |
17895499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 9885967 - 9885807
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||||| | |||| |||||| |||| |||||||||| ||||||||||| |||||||| || ||| ||||||||||| ||||| ||||||||| |
|
|
| T |
9885967 |
acctaacccattaaaactacacaagagtgtaagtcgacccgaaacgggtgatacaaaaattaaaacaatacacaagtgtatcaacctctagttaatccta |
9885868 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcat |
159 |
Q |
| |
|
||||||| | ||||| |||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
9885867 |
aaactaaatgaaggttttcgatccagtgattgaaccctcagtcaacactaaggcggttcat |
9885807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 16498610 - 16498526
Alignment:
| Q |
139 |
gtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaa |
223 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||||||||||||||||| || |||| ||||| | ||||||||||| |||||||||| |
|
|
| T |
16498610 |
gtcaagacggaggcagttcatgtaccatcaactccctgcaacaataacaacaagctaaactaccctttcgagcctcacaatccaa |
16498526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 47309502 - 47309636
Alignment:
| Q |
72 |
aagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaact |
171 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| ||||||||||||||| ||||| |||| ||| ||||||| ||||||||||||| ||||| |||| |
|
|
| T |
47309502 |
aagtgtatcatattctaattaattctaaatctaattaaaggtcttcgatgcagtgatggaactctcgctcaacactgaggcggttcatgtacctt-aact |
47309600 |
T |
|
| Q |
172 |
ccctgcaacaatagcagcaagttaaacgatcctttc |
207 |
Q |
| |
|
| | |||||||| ||||||| ||||| | |||||| |
|
|
| T |
47309601 |
ctcagcaacaatgacagcaagataaactaccctttc |
47309636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 17895498 - 17895436
Alignment:
| Q |
162 |
accttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
17895498 |
accttcaactccctgcaacaatgacaacaagctaaacgactatttcgagcctcacaatccaaa |
17895436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 32494931 - 32495089
Alignment:
| Q |
65 |
aacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcacc |
164 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
32494931 |
aacacacaagtgtatcaacctctagttaatcctaaaattaaataaaggtcttcaatgtggtgattgaaccctcggtcaacactgaggcggttcatgtacc |
32495030 |
T |
|
| Q |
165 |
ttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| | ||||||||| | |||| |||||| |
|
|
| T |
32495031 |
-tcaactccctgcaacaaaggcagcaagctaaacaaccctttcgagtctcacagtccaaa |
32495089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 7620549 - 7620687
Alignment:
| Q |
74 |
gtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactcc |
173 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
7620549 |
gtgtatcaacttctaattaatcctaaaactaattgaaggtcttctatgcgatgattgaaccctctgtcaacacggaggcagttcatgtaccatcaactcc |
7620648 |
T |
|
| Q |
174 |
ctgcaacaatagcagcaagttaaacgatcctttcgagcc |
212 |
Q |
| |
|
|| ||||||| ||| ||| ||||| ||||||||||| |
|
|
| T |
7620649 |
ctacaacaatggcaacaacctaaacagccctttcgagcc |
7620687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 25940065 - 25940216
Alignment:
| Q |
64 |
taacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcac |
163 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| || | |||||||| || |
|
|
| T |
25940065 |
taacacacaagtgtatcaacttctaattaaccctaaaactaattaaaggtcttcgat-cggtgattgaaccctcagtcaacactgaagaggttcatgtac |
25940163 |
T |
|
| Q |
164 |
cttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcaca |
217 |
Q |
| |
|
| |||||||||||||||||| | |||||| |||| | ||||||||||| |||| |
|
|
| T |
25940164 |
c-tcaactccctgcaacaatggtagcaagctaaataaccctttcgagcctcaca |
25940216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 25125319 - 25125534
Alignment:
| Q |
6 |
acccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaact |
103 |
Q |
| |
|
||||||| ||||||||||| |||| |||||| || ||||| | |||| |||||||| |||||| ||||||||||| ||||| ||||||| ||| |
|
|
| T |
25125319 |
acccagtaaaaccacacaagagtgtaagtcggcctcaaacagatgatacaaaaattaaaacaacacacaagtgtatcaacctctagttaatcc----act |
25125414 |
T |
|
| Q |
104 |
aactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcc |
203 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| |||||||| ||| |||||||| ||| ||||| ||| ||| ||||||| |||| | ||||| || |
|
|
| T |
25125415 |
aattaaaggtcttcgatgcagtgattgaaccctcagtcaacactaaggtggttcatgtacc-tcaacatcctacaaaaatagcaacaagcttaacgaccc |
25125513 |
T |
|
| Q |
204 |
tttcgagccgcacaatccaaa |
224 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
25125514 |
tttcgagccccacaatccaaa |
25125534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 19585628 - 19585746
Alignment:
| Q |
92 |
aatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaa |
191 |
Q |
| |
|
||||||| |||||||||||| | ||||||| |||||||||||| | ||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
19585628 |
aatcctacaactaactaaagctattcgatgcggtgattgaaccttgtgttaacatagaggtagttcatgtaccatcaactccctgcaacaatggcagcaa |
19585727 |
T |
|
| Q |
192 |
gttaaacgatcctttcgag |
210 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
19585728 |
gcttaacgatcctttcgag |
19585746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 53095530 - 53095422
Alignment:
| Q |
74 |
gtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactcc |
173 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||| |||||| ||| |||||| | |
|
|
| T |
53095530 |
gtgtatcaacctctaattaatc-taaaactaactaaatatcttcgatgcggtgattaaaccttctgtcaacacggaggcagttcatataccatcaacttc |
53095432 |
T |
|
| Q |
174 |
ctgcaacaat |
183 |
Q |
| |
|
||||||||| |
|
|
| T |
53095431 |
atgcaacaat |
53095422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 36756085 - 36755981
Alignment:
| Q |
84 |
ctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaat |
183 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |||||||||||| || |||||||| |||| | ||||| ||| ||||||| || ||||||| |
|
|
| T |
36756085 |
ctctaattaatcctaaaactaattaaagatcttcgatgcggtgattgaaccatcagtcaacactgaggtgactcatgtaccatcaactctctacaacaat |
36755986 |
T |
|
| Q |
184 |
agcag |
188 |
Q |
| |
|
|||| |
|
|
| T |
36755985 |
ggcag |
36755981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 9394149 - 9394257
Alignment:
| Q |
87 |
taattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcgg-ttcatgcaccttcaactccctgcaac--aat |
183 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||||||| ||| || ||||||||||| | || | |||| ||| ||||||||||||||| ||| |
|
|
| T |
9394149 |
taattaatcctaaaactaaccaaaggtgttcattgtggtgattggaccgtccgtcaacacggaagtggatccatgtaccatcaactccctgcaacaaaat |
9394248 |
T |
|
| Q |
184 |
agcagcaag |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
9394249 |
agcagcaag |
9394257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 24522544 - 24522479
Alignment:
| Q |
72 |
aagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctc |
137 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
24522544 |
aagtgtgtcaacctctaattaatcctaaaactaattaaaagtcttcgatgctgtgattgaaccctc |
24522479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 24600654 - 24600564
Alignment:
| Q |
6 |
acccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatgaaaattaacttaacacaaaagtgtatcaatctctaattaatcc |
96 |
Q |
| |
|
||||||| |||| || ||| |||| ||||| |||||||||| ||||| |||||||| || ||| ||||||||||| ||||||||||||| |
|
|
| T |
24600654 |
acccagtaaaactactcaagagtgtaagtcaaccccaaacgagtgataaaaattaaaacaaaacacaagtgtatcaacctctaattaatcc |
24600564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 40202547 - 40202642
Alignment:
| Q |
8 |
ccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgat--gaaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaa |
101 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| |||||| |||| |||||||| ||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
40202547 |
ccagtaaaaccacacaagagtgtaagtcgaccctaaacggatgatacaaaaattaaaacaacacccaagtgtatcaacctctaattaatcataaaa |
40202642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 43397881 - 43398040
Alignment:
| Q |
65 |
aacacaaaagtgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcacc |
164 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||| | ||||| ||||||||||||||||||| |||||||||| || |
|
|
| T |
43397881 |
aacacacaagtgtatcaacttctaattaatcctaaaactaactacaggtctttgatgcgatgattaaaccctctgtcaacacggaagcggttcatgtact |
43397980 |
T |
|
| Q |
165 |
ttcaactccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||||||||| |||| |||| |||||| |
|
|
| T |
43397981 |
atcaacttcctgcaacaatgtcaacaagctaaacgatcctttcaagcctcacagtccaaa |
43398040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32718199 - 32718422
Alignment:
| Q |
1 |
acctcacccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatccta |
98 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| ||||||||||||||| ||||| ||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32718199 |
acctaacccagt-aaaccacacaagagtctaagtcgaccccaaacatgtgatacaaaaattataacaacacacaagtgtatcaacctctaattaatccta |
32718297 |
T |
|
| Q |
99 |
aaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaac |
198 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||| |||||||| ||||||||||| | ||||| ||||| |||||||||| || |||| ||||| |
|
|
| T |
32718298 |
aaactaattaaaggtcttcggtgcggtgattgaaccctcagtcaacactgaggcggttcacgtacctt-aactctctgcaacaatgacaacaagctaaac |
32718396 |
T |
|
| Q |
199 |
gatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
| || ||||| || ||||||||||| |
|
|
| T |
32718397 |
aacccattcgaaccccacaatccaaa |
32718422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 6363478 - 6363614
Alignment:
| Q |
75 |
tgtatcaatctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccc |
174 |
Q |
| |
|
|||||||| || ||||||||| ||||||||| ||||||| ||||||| |||||||||||| || | |||||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
6363478 |
tgtatcaacctataattaatcataaaactaattaaaggttttcgatgcggtgattgaaccttcagccaacactgagccggttcatgtacc-tcaactccc |
6363576 |
T |
|
| Q |
175 |
tgcaacaatagcagcaagttaaacgatcctttcgagcc |
212 |
Q |
| |
|
||||||| | |||||||| | ||||| ||||||||||| |
|
|
| T |
6363577 |
tgcaacattggcagcaagcttaacgaccctttcgagcc |
6363614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 17197566 - 17197674
Alignment:
| Q |
107 |
taaaggtcttcgatgtggtgattgaaccctctgtca---acacggagg-cggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatc |
202 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||| |||| |||| ||||||||| ||| |||||||| ||||||||| || |||||| ||||| | |
|
|
| T |
17197566 |
taaaggtctttgatatggtgattgaaccctcagtcaaacacactgaggacggttcatgtacc-tcaactccttgcaacaatgacaacaagtttaacgacc |
17197664 |
T |
|
| Q |
203 |
ctttcgagcc |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
17197665 |
ctttcgagcc |
17197674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 9121384 - 9121176
Alignment:
| Q |
6 |
acccagtgaaaccacacaatagtgcaagtcgaccccaaacgggtgatg--aaaattaacttaacacaaaagtgtatcaatctctaattaatcctaaaact |
103 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||||| ||||| || |||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
9121384 |
acccagtaaaaccacacaagagtgttggtcgaccccaaacgggtgatacaaaaataaaaacaacatacaagtgtatcaacctctaattaatcctaaaact |
9121285 |
T |
|
| Q |
104 |
aactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcc |
203 |
Q |
| |
|
|| |||| |||||||||| |||||||||||||| |||| ||||||| |||||||| | | |||||||||||||||||| ||| || |||||||| | |
|
|
| T |
9121284 |
aattaaaagtcttcgatgctgtgattgaaccctcgctcaagacggaggtggttcatgtatcgtcaactccctgcaacaatggcaaaaaattaaacgacgc |
9121185 |
T |
|
| Q |
204 |
tttcgagcc |
212 |
Q |
| |
|
||||||||| |
|
|
| T |
9121184 |
tttcgagcc |
9121176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 23687464 - 23687578
Alignment:
| Q |
109 |
aaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcctttcg |
208 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
23687464 |
aaggtcttcgatgcggtgattgaaccctttgtaaacacggaggcggttcatgtaccatcaact-cctgcaacaatagcagcaagctaaacagccctttcg |
23687562 |
T |
|
| Q |
209 |
agccgcacaatccaaa |
224 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
23687563 |
agcctcacagtccaaa |
23687578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 24059701 - 24059815
Alignment:
| Q |
109 |
aaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaactccctgcaacaatagcagcaagttaaacgatcctttcg |
208 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
24059701 |
aaggtcttcgatgcggtgattgaaccctttgtaaacacggaggcggttcatgtaccatcaact-cctgcaacaatagcagcaagctaaacagccctttcg |
24059799 |
T |
|
| Q |
209 |
agccgcacaatccaaa |
224 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
24059800 |
agcctcacagtccaaa |
24059815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 44924262 - 44924415
Alignment:
| Q |
72 |
aagtgtatcaatc-tctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacacggaggcggttcatgcaccttcaac |
170 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| |||| || ||||||| ||||||||||||||| | || | |||||| ||||||| | ||||||| |
|
|
| T |
44924262 |
aagtgtatcaatcctctaattaatctgaagactaattaaatgtattcgatgcagtgattgaaccctctattaatatggaggcagttcatgtatcttcaac |
44924361 |
T |
|
| Q |
171 |
tccctgcaacaatagcagcaagttaaacgatcctttcgagccgcacaatccaaa |
224 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| |||| ||||| || |||||||| |
|
|
| T |
44924362 |
tccctgcaataatggcagcaaagtaaacgattcttttgagcctcagaatccaaa |
44924415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 22243493 - 22243555
Alignment:
| Q |
84 |
ctctaattaatcctaaaactaactaaaggtcttcgatgtggtgattgaaccctctgtcaacac |
146 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||| |||||||| ||| || |||||||| |
|
|
| T |
22243493 |
ctctaattaatcctaaaactaataaaagatcttcaatgcggtgattggaccgtccgtcaacac |
22243555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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