View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_639 (Length: 222)

Name: NF10954A_low_639
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_639
NF10954A_low_639
[»] scaffold0384 (1 HSPs)
scaffold0384 (15-204)||(16181-16370)
[»] chr6 (5 HSPs)
chr6 (22-204)||(9099189-9099372)
chr6 (44-178)||(29097641-29097777)
chr6 (18-204)||(21364597-21364782)
chr6 (18-204)||(23968579-23968764)
chr6 (99-196)||(20008073-20008171)
[»] chr3 (4 HSPs)
chr3 (22-204)||(19235186-19235369)
chr3 (38-204)||(14865616-14865783)
chr3 (38-196)||(12033570-12033729)
chr3 (38-196)||(17131502-17131661)
[»] chr5 (12 HSPs)
chr5 (15-204)||(20772718-20772907)
chr5 (22-203)||(24930047-24930229)
chr5 (15-204)||(20781493-20781682)
chr5 (144-204)||(28889455-28889515)
chr5 (144-204)||(28896159-28896219)
chr5 (144-204)||(28909407-28909467)
chr5 (144-204)||(28924985-28925045)
chr5 (144-204)||(28931099-28931159)
chr5 (144-204)||(28945802-28945862)
chr5 (99-171)||(22460987-22461059)
chr5 (99-171)||(22467611-22467683)
chr5 (143-198)||(34829960-34830016)
[»] chr7 (6 HSPs)
chr7 (15-204)||(16090822-16091012)
chr7 (15-204)||(29181227-29181417)
chr7 (18-204)||(3857483-3857669)
chr7 (22-204)||(2465118-2465299)
chr7 (38-196)||(2966735-2966894)
chr7 (99-196)||(20906586-20906684)
[»] scaffold0053 (1 HSPs)
scaffold0053 (15-204)||(79608-79798)
[»] chr4 (1 HSPs)
chr4 (15-204)||(16146948-16147138)
[»] scaffold0029 (2 HSPs)
scaffold0029 (18-204)||(91321-91506)
scaffold0029 (18-204)||(97047-97232)
[»] scaffold0072 (1 HSPs)
scaffold0072 (44-204)||(50089-50250)
[»] chr1 (4 HSPs)
chr1 (38-196)||(21710589-21710747)
chr1 (99-196)||(20851258-20851356)
chr1 (99-196)||(20857885-20857983)
chr1 (99-196)||(21706107-21706205)
[»] scaffold0099 (1 HSPs)
scaffold0099 (96-186)||(12781-12875)
[»] chr2 (2 HSPs)
chr2 (38-171)||(10347-10480)
chr2 (83-171)||(25181081-25181169)
[»] scaffold0023 (1 HSPs)
scaffold0023 (38-204)||(135210-135375)
[»] chr8 (1 HSPs)
chr8 (99-191)||(24320801-24320894)
[»] scaffold1469 (1 HSPs)
scaffold1469 (136-204)||(1225-1293)
[»] scaffold0348 (1 HSPs)
scaffold0348 (99-204)||(9167-9273)


Alignment Details
Target: scaffold0384 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 16370 - 16181
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctatttt- 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||     
T  16370 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaa-cattcattcagaacttccaaaactcttctatcatattctattttt 16272  T
Q  114 cacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  16271 cacttcaattatgatcaatatgaacaatatagattagaaaatcatactaatcatcaaatacaacatcatgaacctgattcttgcacatttt 16181  T

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Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 9099372 - 9099189
Alignment:
Q  22 aaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaa 121  Q
    |||||||||||||   | ||| ||||||||||||| | | ||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |||    
T  9099372 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaa 9099273  T
Q  122 -tcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
     | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  9099272 attatgatcaatatcaacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttt 9099189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 29097641 - 29097777
Alignment:
Q  44 aacaacaacaattcattacaatcaaacgttcattcagaacttccaaaact-cgtctatcatattctattttcacttcaa-tcatgatcagtatgaacaat 141  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||| | | ||||| |||||||||||||||||||| | ||||||| ||| |||| |    
T  29097641 aacaacaacaattaactccaatcaaacattcattcagaacttccaaaaattcatctattatattctattttcacttcaaattatgatcaatatcaacatt 29097740  T
Q  142 atagattaggaaatcatactaatcatcaaatacaaca 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  29097741 atagattaggaaatcatactaatcatcaaatacaaca 29097777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 21364782 - 21364597
Alignment:
Q  18 atcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaac-tcgtctatcatattctattttcac 116  Q
    |||||||||| | ||||| |||||| |||||||||||||||||  |||||||| |||||||||||||| |||||| || || || ||||||||  ||||     
T  21364782 atcaaaagaa-cggcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttca- 21364685  T
Q  117 ttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||| |||||||  || ||||||| ||| |||||||||||| ||||||||||||||||||| |||||| | | ||||||| |||||    
T  21364684 tccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatatttt 21364597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 23968764 - 23968579
Alignment:
Q  18 atcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaac-tcgtctatcatattctattttcac 116  Q
    |||||||||| | ||||| |||||| |||||||||||||||||  |||||||| |||||||||||||| |||||| || || || ||||||||  ||||     
T  23968764 atcaaaagaa-cggcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttca- 23968667  T
Q  117 ttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||| |||||||  || ||||||| ||| |||||||||||| ||||||||||||||||||| |||||| | | ||||||| |||||    
T  23968666 tccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatatttt 23968579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 20008171 - 20008073
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||||||||||||||||| | |||| | |||||| || |||||||||||||| |||| |||||||| ||||||| |||||||  |||||| |||| ||||    
T  20008171 atcatattctattttcattccaattacgatcagcatcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatcctta 20008073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 19235369 - 19235186
Alignment:
Q  22 aaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaa 121  Q
    |||||||||||||   | ||| ||||||||||||| | | ||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |||    
T  19235369 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaa 19235270  T
Q  122 -tcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
     | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  19235269 attatgatcaatatcaacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttt 19235186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 14865616 - 14865783
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| |||||||||||||||   ||||||| | ||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||| ||| ||    
T  14865616 aacatcaacaacaacaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaa 14865715  T
Q  138 caatatagattaggaaatcatactaatcat-caaatacaacatcataaacatgattcttacacatttt 204  Q
    ||| || ||||| ||||||||||||||||| ||| |||||||| |||||| || ||||||||| ||||    
T  14865716 caacatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacacctttt 14865783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 12033729 - 12033570
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| |||||||||||||||   || |||| | ||||| || ||||||||||| || || ||||||||||||||||| |||||| | |||||  || ||    
T  12033729 aacatcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcaattcaattacgatcaacatcaa 12033630  T
Q  138 caatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||| |||||||| ||||||||||||| ||||||| |||||||| |||||| |||||||||    
T  12033629 caacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgattctta 12033570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 17131502 - 17131661
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| |||||||||||||||   || | || | ||||| || | ||||||||| || || ||||||||||||||||| | |||| |  ||||  || ||    
T  17131502 aacatcaacaacaacaattcagctcatttaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaa 17131601  T
Q  138 caatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||| |||||||| ||||||||||||| ||||||| |||||||| |||||| |||| ||||    
T  17131602 caacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgatcctta 17131661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 20772718 - 20772907
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaact-cgtctatcatattctatttt 113  Q
    |||||||||||||||| |||| |||||| ||||||||||||| | | ||||||||| |||||||||||||||||||||| | || || |||||||| |||    
T  20772718 gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctacttt 20772817  T
Q  114 cacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    || | |||| |||||||  || ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  20772818 ca-tccaattatgatcaacatcaacaatatagagtaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttt 20772907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 24930229 - 24930047
Alignment:
Q  22 aaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaa 121  Q
    |||||||||||||   | ||| ||||||||||||| | | ||||||||| |||||||||||||||||| | || |||||||||||||||||||||| |||    
T  24930229 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaacattcatctatcatattctattttcactccaa 24930130  T
Q  122 -tcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacattt 203  Q
     | ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  24930129 attatgatcaatatcaacattatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattt 24930047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 20781493 - 20781682
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaact-cgtctatcatattctatttt 113  Q
    |||||||||||||||| |||| |||||| ||||||||||||| | | ||||||||| |||||||||||||||||||||| | || || |||||||| |||    
T  20781493 gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctacttt 20781592  T
Q  114 cacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    || | |||| |||||||  || ||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  20781593 ca-tccaattatgatcaacatcaacaatatagagtaggaaatcataataatcatcaaatacaacattataaacctgattcttacacatttt 20781682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28889515 - 28889455
Alignment:
Q  144 agattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| ||||||    
T  28889515 agattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcatttt 28889455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28896219 - 28896159
Alignment:
Q  144 agattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| ||||||    
T  28896219 agattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcatttt 28896159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28909467 - 28909407
Alignment:
Q  144 agattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| ||||||    
T  28909467 agattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcatttt 28909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28925045 - 28924985
Alignment:
Q  144 agattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| ||||||    
T  28925045 agattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcatttt 28924985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28931159 - 28931099
Alignment:
Q  144 agattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| ||||||    
T  28931159 agattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacccatttt 28931099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28945862 - 28945802
Alignment:
Q  144 agattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| ||||||    
T  28945862 agattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcatttt 28945802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 22460987 - 22461059
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa 171  Q
    ||||||||||||||||| | |||| | |||||| || ||||| ||||| || |||| |||||||| |||||||    
T  22460987 atcatattctattttcattccaattacgatcagcatcaacaacatagaataagaaaacatactaaacatcaaa 22461059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 22467611 - 22467683
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa 171  Q
    ||||||||||||||||| | |||| | |||||| || ||||| ||||| || |||| |||||||| |||||||    
T  22467611 atcatattctattttcattccaattacgatcagcatcaacaacatagaataagaaaacatactaaacatcaaa 22467683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 34829960 - 34830016
Alignment:
Q  143 tagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattcttaca 198  Q
    ||||||| ||||||||||| ||||||||| |||||||   |||||||||||||||||    
T  34829960 tagattaagaaatcatactgatcatcaaattacaacacattaaacatgattcttaca 34830016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 16090822 - 16091012
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttc 114  Q
    ||||||||||| ||||||||   ||||| ||||||| |||||||   ||||||| | |||||||||||||||||||| || || ||||||||||||||||    
T  16090822 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 16090921  T
Q  115 acttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatca-tcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||||| | ||||| ||| ||||| || ||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||    
T  16090922 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacacctttt 16091012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 29181417 - 29181227
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttc 114  Q
    ||||||||||| ||||||||   ||||| ||||||| |||||||   ||||||| | ||||| |||||||||||||| || || ||||||||||||||||    
T  29181417 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 29181318  T
Q  115 acttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatca-tcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||||| | ||||| ||| ||||| || ||||| |||||||||||||||| ||||||||||||| |||| | |||||||||||| ||||    
T  29181317 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacacctttt 29181227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 3857669 - 3857483
Alignment:
Q  18 atcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaac-tcgtctatcatattctattttcac 116  Q
    |||||||||| ||||||| || ||| |||||||||||||||||  |||||||| |||||||||||||| |||||| || ||||| ||||||||  ||||     
T  3857669 atcaaaagaaccagcaattcagcatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatctattatattctaccttca- 3857571  T
Q  117 ttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||| || ||||  || ||||||| ||| |||||||||||| ||||||||||||||||||| |||||| | | |||||||||||||    
T  3857570 tccaattataatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacatttt 3857483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 2465118 - 2465299
Alignment:
Q  22 aaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaact-cgtctatcatattctattttcacttca 120  Q
    |||| |||| |||| |||||| |||||||||||||||||  |||||| | |||||||||||||| ||||||| | || || ||||||||  |||| | ||    
T  2465118 aaaggaacaacaattcaacatcaacaacaacaattcattcaaatcaa-cattcattcagaactttcaaaacttcatccattatattctaccttca-tcca 2465215  T
Q  121 atcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    || |||||||  || ||||||| ||| |||||||||||| ||||||||||||| ||||| |||||| | | |||||||||||||    
T  2465216 attatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatataacattataaacctaaatcttacacatttt 2465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 2966735 - 2966894
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| |||||||||||||||   || |||| | ||||| || ||||||||||| || || ||||||||||||||||| | |||| | |||||  || ||    
T  2966735 aacatcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaa 2966834  T
Q  138 caatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||| || ||||| ||||||||||||||||||||| |||||||| | |||| |||||||||    
T  2966835 caacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattctta 2966894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 20906684 - 20906586
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||||||||||||||||| |||||| | |||||  || ||||| |||||||| ||||||||||||| ||||||| |||||||| |||||| |||||||||    
T  20906684 atcatattctattttcatttcaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacttgattctta 20906586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 79798 - 79608
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttc 114  Q
    ||||||||||| ||||||||   ||||| ||||||| |||||||   ||||||| | ||||| |||||||||||||| || || ||||||||||||||||    
T  79798 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 79699  T
Q  115 acttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatca-tcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||||| | ||||| ||| ||||| || ||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||    
T  79698 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacacctttt 79608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 16147138 - 16146948
Alignment:
Q  15 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttc 114  Q
    ||||||||||| ||||||||   ||||| ||||||| |||||||   ||||||| | ||||| |||||||||||||| || || ||||||||||||||||    
T  16147138 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 16147039  T
Q  115 acttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatca-tcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||||| | ||||| ||| ||||| || ||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||    
T  16147038 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacacctttt 16146948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 91506 - 91321
Alignment:
Q  18 atcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaac-tcgtctatcatattctattttcac 116  Q
    |||||||||| ||||||| |||||| |||||||||||||||||  |||||||| |||||||||||||| |||||| || || || ||||||||  ||||     
T  91506 atcaaaagaa-cagcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttca- 91409  T
Q  117 ttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||| |||||||  || | ||||| ||| |||||||||||| ||||||||||||||||||| |||||| | | |||||||||||||    
T  91408 tccaattatgatcaacatcaccaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacatttt 91321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 97232 - 97047
Alignment:
Q  18 atcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaac-tcgtctatcatattctattttcac 116  Q
    |||||||||| ||||||| |||||| |||||||||||||||||  |||||||| |||||||||||||| |||||| || || || ||||||||  ||||     
T  97232 atcaaaagaa-cagcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttca- 97135  T
Q  117 ttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    | |||| |||||||  || | ||||| ||| |||||||||||| ||||||||||||||||||| |||||| | | |||||||||||||    
T  97134 tccaattatgatcaacatcaccaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacatttt 97047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 50250 - 50089
Alignment:
Q  44 aacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaacaatat 143  Q
    ||||||| |||||||   ||||||| | ||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||| ||| ||||| ||    
T  50250 aacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacat 50151  T
Q  144 agattaggaaatcatactaatc-atcaaatacaacatcataaacatgattcttacacatttt 204  Q
     ||||| |||||||||||||||  ||||||| ||||| |||||| |||||||||||| ||||    
T  50150 ggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacacctttt 50089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 21710589 - 21710747
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| |||||||||||||||   || |||| | ||||| || | ||||||||| || || ||||||||||||||||| | |||| |||||||  || ||    
T  21710589 aacatcaacaacaacaattcagcccattcaagcattcatacaaagcttccaaaattcatccatcatattctattttcattccaattatgatcaacatcaa 21710688  T
Q  138 caatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattctta 196  Q
    ||| |||||||| | ||||||||||| |||||| || ||||| |||||| |||| ||||    
T  21710689 caacatagattaaggaatcatactaaacatcaagtataacattataaacctgatcctta 21710747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 20851356 - 20851258
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||||||||||||||||| | |||| | |||||| || ||||| |||||||| ||||||||||||| ||||||| |||||||  |||||| |||| ||||    
T  20851356 atcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatcctta 20851258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 20857983 - 20857885
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||||||||||||||||| | |||| | |||||| || ||||| |||||||| |||| |||||||| ||||||| |||||||  |||||| |||| ||||    
T  20857983 atcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatcctta 20857885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 21706107 - 21706205
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattctta 196  Q
    ||||||||||||||||| | |||| | |||||| || ||||| |||||||| |||| |||||||| ||||||| |||||||  |||||| |||| ||||    
T  21706107 atcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatcctta 21706205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 12781 - 12875
Alignment:
Q  96 tctatcatattctatttt-cacttcaa--tcatgatcagtatgaacaatatagattaggaaatcatactaatcat-caaatacaacatcataaac 186  Q
    |||||||||||||||||| |||| |||  | ||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  12781 tctatcatattctatttttcactccaaattaatgatcaatatcaacattatagattaggaaatcatactaatcatacaaatacaacattataaac 12875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 10347 - 10480
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| ||||||| ||||||  | || |||| | ||||| || | ||||||||| || || ||||||||||||||||| | |||| | |||||| || ||    
T  10347 aacatcaacaacatcaattcggttcattcaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacgatcagcatcaa 10446  T
Q  138 caatatagattaggaaatcatactaatcatcaaa 171  Q
    ||| |||||||| ||||||||||||| |||||||    
T  10447 caacatagattaagaaatcatactaaacatcaaa 10480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 25181169 - 25181081
Alignment:
Q  83 cttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa 171  Q
    ||||||||| || || ||||||||||||||||| | |||| | |||||  || ||||| |||||||| ||||||||||||| |||||||    
T  25181169 cttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaa 25181081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 135210 - 135375
Alignment:
Q  38 aacataaacaacaacaattcattacaatcaaacgttcattcagaacttccaaaactcgtctatcatattctattttcacttcaatcatgatcagtatgaa 137  Q
    ||||| |||||||||||||||   || |||| | ||||| || ||||||| ||  || || ||||||||||||||||| | ||||  ||||||  || ||    
T  135210 aacatcaacaacaacaattcagcccattcaagcattcatacaaaacttcccaat-tcatccatcatattctattttcattccaattttgatcacgatcaa 135308  T
Q  138 caatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattcttacacatttt 204  Q
    ||| |||||||| ||||||||||||| ||||||| |||||||  |||||| |||||||||||| ||||    
T  135309 caacatagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacacctttt 135375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 24320894 - 24320801
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgat 191  Q
    ||||||||||||||||| | |||| | |||||| || ||||| |||||||| ||||||||||||| ||||||| |||||||  |||||| ||||    
T  24320894 atcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgat 24320801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 1225 - 1293
Alignment:
Q  136 aacaatatagattaggaaatcatactaatcatcaaatacaacatcataaacatgattcttacacatttt 204  Q
    ||||||| ||||||||||||||||||||||||||| || |||||  ||||| ||| |||||| ||||||    
T  1225 aacaatacagattaggaaatcatactaatcatcaattataacattgtaaacctgaatcttacgcatttt 1293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 9167 - 9273
Alignment:
Q  99 atcatattctattttcacttcaatcatgatcagtatgaacaatatagattaggaaatcatactaatcatcaaa-tacaacatcataaacatgattcttac 197  Q
    ||||||||||||||||  | ||||  ||||||  || ||||| |||||||  ||||||||||||| ||||||| |||||||  |||||| | ||||||||    
T  9167 atcatattctattttcgttccaattctgatcacaatcaacaacatagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttac 9266  T
Q  198 acatttt 204  Q
    || ||||    
T  9267 acctttt 9273  T

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