View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_643 (Length: 222)
Name: NF10954A_low_643
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_643 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 30275057 - 30274944
Alignment:
| Q |
95 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275057 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
30274958 |
T |
|
| Q |
195 |
aatgtaattttatt |
208 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30274957 |
aatgtaattttatt |
30274944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 30275192 - 30275152
Alignment:
| Q |
2 |
caaaagattaaaaggagttaaataattgtagaactatattc |
42 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275192 |
caaaagattaaaaggagttaaataattgtagaactatattc |
30275152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University