View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_653 (Length: 220)

Name: NF10954A_low_653
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_653
NF10954A_low_653
[»] chr2 (6 HSPs)
chr2 (14-207)||(37307433-37307626)
chr2 (26-203)||(13186680-13186858)
chr2 (26-203)||(7305311-7305488)
chr2 (33-128)||(40190655-40190750)
chr2 (137-206)||(40196727-40196797)
chr2 (43-123)||(26381517-26381597)
[»] chr5 (6 HSPs)
chr5 (37-203)||(34080978-34081145)
chr5 (26-203)||(18259368-18259545)
chr5 (37-104)||(4560554-4560621)
chr5 (33-123)||(32216661-32216751)
chr5 (26-104)||(18883272-18883350)
chr5 (26-75)||(18933974-18934023)
[»] chr3 (7 HSPs)
chr3 (26-203)||(54346527-54346705)
chr3 (26-203)||(27156396-27156573)
chr3 (26-188)||(46428363-46428526)
chr3 (26-188)||(42794293-42794456)
chr3 (26-188)||(54812477-54812640)
chr3 (26-106)||(34265159-34265239)
chr3 (26-114)||(43912481-43912569)
[»] chr1 (5 HSPs)
chr1 (26-203)||(23949490-23949668)
chr1 (26-203)||(23085139-23085318)
chr1 (26-203)||(5308434-5308612)
chr1 (26-203)||(50952796-50952975)
chr1 (24-188)||(22065428-22065593)
[»] chr8 (5 HSPs)
chr8 (24-203)||(26616951-26617131)
chr8 (26-203)||(1635790-1635968)
chr8 (26-203)||(456584-456762)
chr8 (26-188)||(44145512-44145675)
chr8 (26-81)||(38560847-38560902)
[»] chr7 (6 HSPs)
chr7 (26-203)||(8019973-8020151)
chr7 (26-203)||(48618726-48618904)
chr7 (38-200)||(29213969-29214132)
chr7 (102-203)||(25713258-25713360)
chr7 (26-104)||(24473340-24473418)
chr7 (26-105)||(29760073-29760152)
[»] chr4 (5 HSPs)
chr4 (26-200)||(34390034-34390209)
chr4 (26-199)||(36894645-36894820)
chr4 (26-206)||(47597819-47598000)
chr4 (26-106)||(43271019-43271099)
chr4 (57-89)||(28561506-28561538)
[»] chr6 (1 HSPs)
chr6 (26-188)||(1223191-1223354)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 37307433 - 37307626
Alignment:
Q  14 atgtcgaacaaaatctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccac 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37307433 atgtcgatcaaaatctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccac 37307532  T
Q  114 atccagcaataaccctcatatctttgcaagcaccatcatgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgatgtcc 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37307533 atccagcaataaccctcgtatctttgcaagcaccatcatgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgatgtcc 37307626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 13186858 - 13186680
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  13186858 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctaaatcacgaaaaaggccgccacatccagcaataa 13186759  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || |||||| || |||||||| ||||||||||||||| ||||||||||||    
T  13186758 cccccatatccttgcaagcaccatcactattaagcttgatcaaaccttctcgaggccgcttccaacctatatagatgat 13186680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 7305311 - 7305488
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||  | ||||||||||||||||    
T  7305311 atctcagcatgtaaggcatcacaagctccaatctttttagtgtagtctttgatccatctaccgtctgaatcatgaaaaaggccaccacatccagcaataa 7305410  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    | | |||||| ||||||||||||||| | || |||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  7305411 ctcccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgctaccaac-tatatagatgat 7305488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 40190655 - 40190750
Alignment:
Q  33 catataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataaccc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  40190655 catataaggcatcacaagctccaatcttcttaatgtagcctttgatccatctaacgtctgaatcacgaaaaagaacgccacatccagaaataaccc 40190750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 40196727 - 40196797
Alignment:
Q  137 ttgcaagcaccatcat-gttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgatgtc 206  Q
    |||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||    
T  40196727 ttgcaagcaccaccattgttgagcttgatccaaccttctcgaggccgcttccaacctatatagatgatgtc 40196797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 26381517 - 26381597
Alignment:
Q  43 atcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaat 123  Q
    |||||| || |||||||||||||||||| |||| ||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  26381517 atcacacgcaccaatcttcttagtgtagtctttaatccatctaccttctgagtcacgaaagagattcgcacatccagcaat 26381597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 34080978 - 34081145
Alignment:
Q  37 taaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataaccctcatatct 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||     
T  34080978 taaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagaccgccacatccagcaataacccccatatcc 34081077  T
Q  137 ttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  34081078 ttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 34081145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 18259368 - 18259545
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| || ||||||    
T  18259368 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagtctttgatccatctaccgtctgaatcacgaaaaaggccgccacat-caacaataa 18259466  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| |||||||||| |||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  18259467 cccccatatccttgcaagcactatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 18259545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 4560554 - 4560621
Alignment:
Q  37 taaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  4560554 taaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaa 4560621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 32216751 - 32216661
Alignment:
Q  33 catataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaat 123  Q
    |||||||||||| |||  | |||||||||||| |||||||||| ||||||||||||||  | |||||||||||| | ||||||||| ||||    
T  32216751 catataaggcatgacacacaccaatcttcttattgtagcctttaatccatctaccgtccaagtcacgaaaaagacccccacatccaacaat 32216661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 18883350 - 18883272
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 104  Q
    |||||||||  |||||||||||||| ||||||||| |||||| ||||||| |||||| |||| |||| |||| ||||||    
T  18883350 atctcaacaagtaaggcatcacaagttccaatcttattagtgcagcctttaatccatttaccatctgcatcatgaaaaa 18883272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 18934023 - 18933974
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagccttt 75  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||    
T  18934023 atctcagcatgtaaggcatcacaagctccaatctttttagtgtagccttt 18933974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 54346705 - 54346527
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  54346705 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataa 54346606  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  54346605 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 54346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 27156396 - 27156573
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  27156396 atctcagcatgtaaggcatcacaagctctaatcttcttagtgtagcctttgatccatctaccgtctgaatcatgaaaaaggccgccacatccag-aataa 27156494  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  27156495 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttttcgaggccgcttccaacctatatagatgat 27156573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 46428526 - 46428363
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  46428526 atctcaacatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 46428427  T
Q  126 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 188  Q
      | |||||| ||||| ||||| ||  ||||||||||| | |||||||| ||||| || |||||    
T  46428426 gacccatatccttgcaggcaccgtcgctgttgagcttgattcaaccttcctgaggtcgtttcca 46428363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 42794456 - 42794293
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||| |||| |||| ||| ||||||| | | ||||| || | ||||     
T  42794456 atctcagcatgtaagacatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcgcgaaaaataccaccacaaccggaaatat 42794357  T
Q  126 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 188  Q
      | |||||| ||||| ||||| ||  ||||||||||| |||||||||| ||||| || |||||    
T  42794356 gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca 42794293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 54812477 - 54812640
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  54812477 atctcagcatgtaaggcatcacaagcttcaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 54812576  T
Q  126 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 188  Q
      | |||||| ||||| ||||| ||   |||||||||| |||||||||| ||||| || |||||    
T  54812577 gacccatatccttgcaggcaccgtcgccgttgagcttgatccaaccttcctgaggtcgtttcca 54812640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 34265239 - 34265159
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaga 106  Q
    |||||| ||| |||| ||||||||||| ||||||| |||||||| | ||| |||||| |||| ||||||||||||| ||||    
T  34265239 atctcagcatgtaagacatcacaagcttcaatctttttagtgtaacatttaatccatttaccatctgaatcacgaataaga 34265159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 43912481 - 43912569
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccaca 114  Q
    |||||| ||| ||||| ||||||||||| ||||||||||  ||||||||| |||||| || | |||  ||||||||||| ||| |||||    
T  43912481 atctcatcatgtaaggtatcacaagctcaaatcttcttaacgtagcctttaatccatttatcatctacatcacgaaaaatatcaccaca 43912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 23949668 - 23949490
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  23949668 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataa 23949569  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  23949568 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 23949490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 23085139 - 23085318
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  23085139 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgcctcatccagcaataa 23085238  T
Q  126 -ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
     ||| |||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  23085239 ccccccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagatgat 23085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 5308612 - 5308434
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||    
T  5308612 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtttgaatcacgaaaaaggcagccacatccagcaataa 5308513  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  5308512 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 5308434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 50952796 - 50952975
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgta-gcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaata 124  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  50952796 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtaagcctttgatctatctaccgtctgaatcacgaaaaaggccgccacatccagcaata 50952895  T
Q  125 accctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    |||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  50952896 acccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 50952975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 22065428 - 22065593
Alignment:
Q  24 aaatctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaat 123  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| ||   |||    
T  22065428 aaatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccgaaaat 22065527  T
Q  124 aaccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttcca 188  Q
    |   | |||||| ||||| ||||| ||| ||||||||||| |||||||||| ||||| || |||||    
T  22065528 atgacccatatccttgcaggcaccgtcactgttgagcttgatccaaccttcctgaggtcgtttcca 22065593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 26616951 - 26617131
Alignment:
Q  24 aaatctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaat 123  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||    
T  26616951 aaatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatgaagcaat 26617050  T
Q  124 aaccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    |||||||||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  26617051 aaccctcatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 26617131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 1635968 - 1635790
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1635968 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatttaccgtctgaatcacgaaaaaggccgccacatccagcaataa 1635869  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    |||  ||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  1635868 cccctatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagatgat 1635790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 456584 - 456762
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  456584 atctcagcatataagacatcacaaactccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataa 456683  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || ||| || ||||||| ||| ||||||||||||||| ||||||||||||    
T  456684 cccccatatccttgcaagcaccatcactattaagcctgatccaaccctctcgaggccgcttccaacctatatagatgat 456762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 44145675 - 44145512
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  44145675 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 44145576  T
Q  126 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 188  Q
      | |||||| ||||| ||||| ||  ||||||||||| |||||||||| ||||| || |||||    
T  44145575 gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca 44145512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 38560847 - 38560902
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatcca 81  Q
    |||||||||| ||||||||||||| |||| || |||| |||||||||||| |||||    
T  38560847 atctcaacatgtaaggcatcacaaactccgatattctcagtgtagcctttaatcca 38560902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 8019973 - 8020151
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  8019973 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccaacaataa 8020072  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  8020073 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgat 8020151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 48618904 - 48618726
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||| |||||||    
T  48618904 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccatctgaatcacaaaaaaggccgccacatccggcaataa 48618805  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgat 203  Q
    ||| |||| | ||||||||||||||| | || |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  48618804 cccccataaccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagatgat 48618726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 29213969 - 29214132
Alignment:
Q  38 aaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataaccctcatatctt 137  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||  |||||||||||  ||||| || |||||  |    
T  29213969 aaggcatcacaagctctaatcttcttagtgtagcatttgacccatctaccgtctaaatcacgaaaaaggccgccacatccaaaaataatccccatattct 29214068  T
Q  138 tgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagat 200  Q
    |||||||||||||| | ||||||||| |||||||||| |||| ||||||||||| |||||||||    
T  29214069 tgcaagcaccatcactattgagcttgatccaaccttcatgagaccgcttccaacctatatagat 29214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 25713360 - 25713258
Alignment:
Q  102 aaagatcgccacatccagcaataaccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagat 200  Q
    ||||| ||||||||||| ||||||||| ||| || ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  25713360 aaagaccgccacatccaacaataacccccatgtccttgcaagcatcatcactgttgagcttgatccaaccttcttgaggccgcttccaacctatatagat 25713261  T
Q  201 gat 203  Q
    |||    
T  25713260 gat 25713258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 24473418 - 24473340
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 104  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||| |||| |||||||||||    
T  24473418 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtaacctttaatccatttaccatctgcatcacgaaaaa 24473340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 29760073 - 29760152
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaag 105  Q
    |||||||||| ||| ||||||||| |||||||||||||||  || || ||||||||| | |||| || ||||| ||||||    
T  29760073 atctcaacatgtaaagcatcacaaactccaatcttcttagcataaccattgatccattttccgtttgtatcacaaaaaag 29760152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 34390034 - 34390209
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  34390034 atctcagcatgtaaggcatcacaagctccaatcttcttagtatagcctttgatccatctaccgtttgaatcacgaaaaaggccgccacatccagcaataa 34390133  T
Q  126 ccctcatatctttgcaagcaccatca-tgttgagcttggtccaaccttcttgaggccgcttccaacttatatagat 200  Q
    ||| |||||| ||||||||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||||||    
T  34390134 cccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat 34390209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 36894645 - 36894820
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  36894645 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcatgaaaaaagccgccacatccagcaataa 36894744  T
Q  126 ccctcatatctttgcaagcaccatcat--gttgagcttggtccaaccttcttgaggccgcttccaacttatataga 199  Q
    ||| |||||| ||||||||||||||||   |  |||||| ||||||||||| ||||||||||||||| ||||||||    
T  36894745 cccccatatccttgcaagcaccatcattattaaagcttgatccaaccttctcgaggccgcttccaacctatataga 36894820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 47597819 - 47598000
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | ||||     
T  47597819 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat 47597918  T
Q  126 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttccaacttatatagatgatgtc 206  Q
      | |||||| ||||| ||||| ||  ||||||| ||| |||||||||||||||| || ||||| | ||| ||||| |||||    
T  47597919 gacccatatccttgcaggcaccgtcgctgttgagtttgatccaaccttcttgaggtcgtttccatcctatgtagataatgtc 47598000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 43271019 - 43271099
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaga 106  Q
    |||||| ||| |||||||||||||||||  |||||||||||||||||||| ||| || |||| ||||||| ||||||||||    
T  43271019 atctcagcatgtaaggcatcacaagctcacatcttcttagtgtagcctttaatcaatttaccatctgaattacgaaaaaga 43271099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 28561506 - 28561538
Alignment:
Q  57 tcttcttagtgtagcctttgatccatctaccgt 89  Q
    ||||||||||||||||||| |||||||||||||    
T  28561506 tcttcttagtgtagcctttaatccatctaccgt 28561538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 1223191 - 1223354
Alignment:
Q  26 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa 125  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||  |||||||||| | | |||||  | | ||||     
T  1223191 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatatgcgtcacgaaaaataccaccacaatcggaaatat 1223290  T
Q  126 ccctcatatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca 188  Q
      | |||||| ||||| ||||| ||  ||||||||||| |||||||||| ||||| || |||||    
T  1223291 gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca 1223354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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