View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_656 (Length: 220)
Name: NF10954A_low_656
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_656 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 36331098 - 36330905
Alignment:
| Q |
15 |
acatcattcaattagcaaactacccctgctccacacacccacacnnnnnnngacaattgcaccgaccatttctgtaacttaattggtgagccatgtggca |
114 |
Q |
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| T |
36331098 |
acatcattcaattaccaaactacccctgctccacacacccacacaaaaaaagacaattgcaccgaccatttctgtaacttaattggtgagccatgtggca |
36330999 |
T |
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| Q |
115 |
agatgaaaaaggaaataggagcttacctcacactcggtgataagggaagaactatagagccttataatatgagcaactgaacgcaacaccaaac |
208 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
36330998 |
agataaaaaaggaaatagaagcttacctcacactcggtgataagggaagaactataaagccttataatatgagcaactgaacgcaagaccaaac |
36330905 |
T |
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